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Detailed information on CNT30553866


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693744Oryza glaberrimaOryza sativa33.2156.7998.85347forward

Expression of CNT30553866

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MRTDPPEKNPANKKMTRRQEQGREHVSGQGSRIPSEQCAALTLALHCRALYFGQRKHPAHETHRPELPCMAEMQ*

>peptide 2 (60 aa)
LKWPSTSPFFFTQRRNPLIPSLPQQKASSLSMLLIYYYYNKIKIPHLDLDELRQIPPLYG*

>peptide 3 (48 aa)
MMMMMMMMGQKYHPRMRTYRMFLHSAIVMALVQESGVHHGAKIWESSG*

>peptide 4 (35 aa)
MNSARFRRFTGELEHRLPEQSIVSSSPPLIKRLCR*

Sequence

>CNT30553866
CTTAAATGGCCGTCAACGTCTCCGTTCTTTTTCACACAACGGCGTAATCCCTTGATCCCTTCCCTCCCCCAACAGAAGGCATCGTCTCTCTCCATGCTGC
TGATCTACTATTACTACAACAAAATAAAAATTCCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGC
CCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGT
CCAGCTGCATCAAAGTGCATGAGCTTGGATCTAGAAGATCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGC
CCCTGTGACTTGATTTTGTTCAGATTTGATGATGATGATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGCAT
TCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTGGTTAGTGTGGAGACGCAATCTGTGTAGATG
AAAATAAAACAACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGCCATATTTTTGTTAGCGTTTAAA
TTGCGTTGTTTCCAATTTAATTGTGATATTACAACATGGGACGATGACGCCGTTTAAGTGAAAGAGGAGCGCATGCGTACTGACCCACCAGAAAAAAACC
CAGCGAATAAGAAGATGACACGTCGCCAGGAACAGGGAAGGGAACATGTATCGGGACAGGGAAGCCGCATCCCCAGCGAGCAGTGCGCCGCGTTGACTCT
TGCTTTGCATTGCAGGGCCCTCTACTTTGGGCAGAGGAAACACCCGGCTCACGAAACACACCGTCCTGAACTTCCATGCATGGCAGAAATGCAATAATGT
TTACCTACCCGGTGAATAAAAACGTACTCCCTCCCTATTTTAATT