Detailed information on CNT30553865


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690882Oryza glaberrimaOryza sativa72.9451.6795.7186forward
CNT30102828Oryza glaberrimaOryza rufipogon65.8824.7195.83168forward
CNT30117152Oryza glaberrimaOryza nivara68.2438.5896.55174forward

Expression of CNT30553865

Peptides detected in this lncRNA

>peptide 1 (66 aa)
YPPPPTGAAAAVHLVAGRRRSSFGSRFPTFRRRVFPLRKVSKRLWKPKKRSISAKVMIWRIKLVLG*

>peptide 2 (36 aa)
TRHRRPEPPPPFISSPAVVVRRLARGFRRSGGECFR*

>peptide 3 (61 aa)
LPATADRSRRRRSSRRRPSSFVVWLEVSDVPEESVSVEEGFEASVEAQEEEYLSEGDDLED*

Sequence

>CNT30553865
CTACCCGCCACCGCCGACCGGAGCCGCCGCCGCCGTTCATCTCGTCGCCGGCCGTCGTCGTTCGTCGTTTGGCTCGAGGTTTCCGACGTTCCGGAGGAGA
GTGTTTCCGTTGAGGAAGGTTTCGAAGCGTCTGTGGAAGCCCAAGAAGAGGAGTATCTCAGCGAAGGTGATGATCTGGAGGATTAAGCTTGTTCTTGGTT
AAGATGCCTGTGGAGTGGAGTCGCCATAGCTGTTCCGTAGTTTGTTTTAGTTTTT