Detailed information on CNT30553864


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LFN3|PT511_ARATH, E-value = 9e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521026Oryza glaberrimaSetaria italica18.0990.791.69361forward
CNT30374269Oryza glaberrimaArabidopsis thaliana5.2622.4484.76105forward
CNT30589954Oryza glaberrimaMusa acuminata14.2352.8981.34284forward
CNT30246688Oryza glaberrimaAvena sativa20.9962.2688.31419forward
CNT30363627Oryza glaberrimaSorghum bicolor6.2152.188.71124forward
CNT30596265Oryza glaberrimaOryza meridionalis7.526099.33150forward
CNT30370304Oryza glaberrimaOryza glumipatula69.6410099.571390forward
CNT30104895Oryza glaberrimaOryza longistaminata61.0798.7898.851219forward
CNT30149311Oryza glaberrimaBrachypodium distachyon7.8273.2494.23156forward
CNT30101731Oryza glaberrimaOryza rufipogon32.6782.8598.93652forward
CNT30551105Oryza glaberrimaOryza brachyantha18.8995.9391.51377forward
CNT3063900Oryza glaberrimaSelaginella moellendorffii5.1139.6985.29102forward

Expression of CNT30553864

Peptides detected in this lncRNA

>peptide 1 (46 aa)
YVCVHYSVQCTMKALTAYKLLTKSAIYEMTKKQSTDGCIKLINHSN*

>peptide 2 (60 aa)
MVSAEVLPTSKNTARFSAKAQSELVPNTKKSGRNVPTARSLGSSTNTHGTSRKPRQHGAT*

>peptide 3 (31 aa)
MKVYSSPPESRCKCKYFPKPINSHDLPSRSN*

>peptide 4 (85 aa)
MPLEVSRIWMSTSRVASNATAASCSATPRTSKRASPYAAMATPNEMESMLSMEDDLKVSFLKSTPMEYTATGMSALSIWMKDTER*

>peptide 5 (87 aa)
MADEGDGEGGAEGHVDHGEGDREGPVVHLGVEDVLVVDDDGEGEEDPDADVAVGEEHLAEHRLRHAAGAPAAGHGWRLPGDWIWIGEG

Sequence

>CNT30553864
TATGTGTGTGTTCACTACTCAGTACAGTGCACTATGAAAGCACTAACGGCATACAAGTTACTAACAAAAAGTGCCATCTATGAAATGACCAAGAAACAGT
CGACGGACGGATGCATCAAGTTGATAAACCATTCAAATTGAAAAGGTAGAAATACACAGCAGTAGATTATAATATTACAGTAAGCTCATTATATATAGAA
GATAACCACCAAAATACCAATATGTAGAAGTACATTTTTAGTACCTAGGCTACTAGTAGAACAAATAAATTTTAGGCAATGAGCGAGAGAGGCAACGAGG
CTGTCTTTCTCTGGAACAAAAATAGCTGAATAAATAACAGGGTAACATGAAAGTTTACTCTAGTCCTCCAGAAAGTAGGTGCAAGTGCAAGTATTTTCCT
AAACCAATAAATTCCCATGATTTGCCCTCCAGATCCAACTAAAGTTAAATAAGTGAAAGAACAAACTGGTGTCCACCTCCTTGAAAGCAACCGTAGACCA
ACCAAACTACAGTCTTTTGCACTTTGCACCAGATACCCTGCACAACATCCAACATAATTAGAACAAAGGGATACATACCAAGGAAGTGAACAACATTCAA
GAGTACTTTAGCAATGCCTCACGCAACATTACATAGGGCCCAAGCTTTCTTAGTTGCAACAAAGTGGATATAGTGATTATATAGACTACAAAGGCTGTTG
CAACAAAGCATTTCAGATAGTATATGTTTACACTTCTCTAGTACTCCAGTAAACATATGTAGCATCTCAGTAATAAATAAAAAAATACAGGTGTGTAAAC
TATAAAAGATCGCACATTTTTCCATCTATTAAATGTAAAAGATCACATTTTACTCCATAATTTATTGCTCTCCTACAATGGATCAAGGTAAAGAACAAAC
ACATTGAGAGTGCAACCAAAAGAGATAACACAGCCGGATTTAGAACCAACCAATTTGTGTGTGCCAGGATCAGATCTGGTGGTGGCTCTATGCCTGGTTA
TCGCTCTTGCGATCACTGTGCCCATCGCGCTCCTGCAACAGCGAGCCAGCCTCCTCATCAGCCTGGCTGATCTTCTTCTGCGCCTCCTTCGCCTTGAGCG
CCTGCAGCTTGACGTGGTTGTAGTATGCCACCCCCAAGAAGGCGATCAGCAGCCAGTCCTTGACCACCCCGGCGACGTTCATGGTGAGCGCGGAGGTCTT
GCCGACGAGCAAGAACACCGCCAGATTCAGCGCGAAGGCGCAGAGCGAGTTGGTCCCGAACACGAAGAAGTCCGGGCGGAACGTGCCGACGGCGCGCAGC
CTGGGCAGCTCGACGAACACCCACGGCACGAGCAGGAAGCCGAGGCAGCACGGCGCGACGTAGTACAGAGAGGTGATTGGGTTGAGCGAGATGCCCTTGG
AGGTGAGCAGGATCTGGATGAGCACGAGCCGCGTGGCCTCGAACGCCACCGCGGCGAGCTGCAGCGCGACACCCCGAACATCGAAGCGCGCCTCGCCGTA
TGCGGCGATGGCGACGCCGAACGAGATGGAGAGCATGTTGAGCATGGAGGACGACCTGAAGGTCTCCTTCTTGAAGAGCACCCCGATGGAGTACACGGCG
ACGGGCATGAGCGCCTTGAGCATCTGGATGAAGGACACGGAGAGGTAGATGTAGGCCGAGTTGGAGAACCACAGCGACATGGCGTAGAGCGCGCCGATGG
GAACAACGGAGGAGGTGTAGAGCTGCGGGGTCATGGCGGACGAGGGCGACGGCGAGGGAGGAGCAGAAGGCCATGTGGACCATGGTGAGGGAGATCGGGA
AGGGCCAGTTGTACATCTTGGGGTCGAGGATGTACTTGTTGTAGACGATGACGGCGAAGGAGAGGAAGATCCAGACGCCGACGTAGCAGTAGGAGAGGAG
CACCTTGCGGAGCACCGACTCCGACATGCCGCCGGCGCCCCCGCCGCCGGCCATGGCTGGCGCCTCCCCGGCGACTGGATCTGGATCGGCGAGGGG