« Back to Oryza glaberrima search


Detailed information on CNT30553830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004272, E-value = 4e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690750Oryza glaberrimaOryza sativa54.563.694.4339forward
CNT3099666Oryza glaberrimaOryza rufipogon49.261.3294.44306forward

Expression of CNT30553830

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EEIDNPAAATNPSRHHPNRCCAVAAGLAIAVQRHSCSTP*

Sequence

>CNT30553830
GGAAGAGATCGATAACCCTGCAGCCGCTACAAACCCTAGCCGCCATCACCCCAATCGCTGCTGCGCCGTCGCCGCAGGTTTAGCCATCGCCGTCCAGCGC
CACTCCTGCTCGACTCCTTGAGAGCAGGAGTTTCAGGAAGCGGGGAAAGCAGGAGGAGAAAAGAAGGAAAAAGGGAAGAGAGGCAAAAGTTGGGGATTTT
CTGGGTTTTCATAAATTGATCTCAAATTCGATTTCTCCTCTGTAAGGGTACCTAATGATATTGATCGGCATTGGGACGGGAGTAGCACCCTTGAACTACA
AATTATTATTGCACACTATTAAAATTTAGTTTTAGATTATGTTTCTACTTAGATAAGTTTTGCGTAGAACTTATGAAGGTCATTTAAAGTTCTGGTCCTT
ATTTTCACGTGGAATTTGTAGAGCTAGGATGGGTTGGATTGTGTGGTTTATATCGTTATTGAGTTATTTTATAACTGCCTATCGTGGATGTCTGTATTTT
TAGGTTACTCTGCCGAAATTTCTAATAATTTTGGGAGTTAGTGGTTTTTTAGTGTAGTTTGGTGTGGCACTCTAGGTATGTGGCTACCTGGGGTGTTACA
TTTCATTTATTGAGACATCCAC