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Detailed information on CNT30553813


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-86

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693795Oryza glaberrimaOryza sativa100.1197.799.47936forward
CNT30672296Oryza glaberrimaSetaria viridis73.5884.7387.65688forward
CNT30669573Oryza glaberrimaTriticum dicoccoides73.5870.1387.94688forward
CNT30141474Oryza glaberrimaLolium perenne73.5874.8688.81688forward
CNT30364833Oryza glaberrimaSorghum bicolor73.5870.2886.19688forward
CNT30583684Oryza glaberrimaEchinochloa crusgalli73.5832.7886.92688forward
CNT30604138Oryza glaberrimaOryza punctata79.4787.8395.15743forward
CNT30550711Oryza glaberrimaOryza brachyantha56.0474.8688.55524forward

Expression of CNT30553813

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MEGGFLLDVVVSKRAPIFELLASEDETLLVRWDSLLVLDLGLYIVNGIRGLNLKGYGLASESLHKDL

>peptide 2 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 3 (42 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKIC

>peptide 4 (52 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICIPPLRRRTR*

Sequence

>CNT30553813
TTTAATCTGAAATGTAGGCAAATTTGAATGAAGAGTTGTAATGGGTGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAG
TTTAAACTGCTATGACCCAGCAAATGTTCGGACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGAT
AATGCAGACACAGGATAACAGTACAGCAGCAATTCCATCAATCAATGATTACTGACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGA
ATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCG
CCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATTCCACCCCTTAGGCGCAG
AACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGG
GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAA
GATTTGCATGCCTCCCCGGAGGCGGAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA
GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTA
TGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGC