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Detailed information on CNT30553804


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 7e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Oryza glaberrimaOryza sativa49.5959.896.66299forward
CNT30674769Oryza glaberrimaSetaria viridis21.8926.8396.97132forward
CNT30523172Oryza glaberrimaSetaria italica21.8920.8596.97132forward
CNT30500037Oryza glaberrimaCoffea canephora21.3922.0191.47129forward
CNT30178164Oryza glaberrimaSecale cereale27.5324.5696.39166forward
CNT30285916Oryza glaberrimaTriticum aestivum27.5327.1795.78166forward
CNT30591107Oryza glaberrimaMusa acuminata22.7244.7791.24137forward
CNT30435581Oryza glaberrimaAegilops tauschii27.5333.1395.78166forward
CNT30656187Oryza glaberrimaTriticum dicoccoides27.5324.7495.78166forward
CNT30679489Oryza glaberrimaTriticum urartu15.5941.9696.8194forward
CNT30719929Oryza glaberrimaTriticum spelta27.5328.5795.78166forward
CNT30101904Oryza glaberrimaOryza rufipogon16.4237.0810099forward
CNT30576569Oryza glaberrimaOryza barthii62.3531.0797.34376forward
CNT30116662Oryza glaberrimaOryza nivara63.3516.9195.29382forward

Expression of CNT30553804

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSEDSTSSVMVFPVRVFTKICILAAAGEGSPPRLR

Sequence

>CNT30553804
GTGAACTCGCATCGCATCATCAATTCAGTAACAGATAATAATATAGGCTACTACTCAAAAGTTTTCCAATTGTAAACGGAGAACAAAACGCATATAATCT
GAATAACATGTAACCAGCAGCAGCTCATCTCAGCTCATGATATAACAGATAAAAAGGAATGAAAAGCATCAGAGCAAAGCGAGCAGCAGCATCAACAACC
TAGGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGATCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGTTGTTGG
GGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTT
CTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGT
GTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGCGGGGGAGGGGTCGCCTCCGCGGCTG
CGG