Detailed information on CNT30553784


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693516Oryza glaberrimaOryza sativa49.2392.0999.28699forward
CNT30108234Oryza glaberrimaOryza longistaminata32.5448.0793.51462forward
CNT30576369Oryza glaberrimaOryza barthii77.8261.4999.731105forward
CNT30116872Oryza glaberrimaOryza nivara58.187.9599.15825reverse complement

Expression of CNT30553784

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDPEVAATGGSSASGVWCSHEQIRQQQGL*

>peptide 2 (33 aa)
MFDCDVNLWLLCFLKNVYLFKASARIELSLYFF*

>peptide 3 (55 aa)
MFLIRHRHAYYIVSRLSKSDIYMRFTTRTELELCSSVPLRPFIVYQHGGLLHPFT*

>peptide 4 (37 aa)
MSLSRMDLGMVSGIEALPSELWQRAEFSTMMAARCCD*

>peptide 5 (80 aa)
MSLAEWVEEKTGFPHLHGSTFAHFLSPYSLPLPSPQSLLHEPPPPPPQPLISPYVVPPPSRWCLGMLPINNSLSSSAYCC*

Sequence

>CNT30553784
GAGTTATATGTGTCGGTTCTGAAAATTAAACGGAACCTATATTTCCACCCAAATATAGGTGCCGTTTTTTTTTTCAATGGCTAGTACATTTGAAATAATC
AAACGTGCATTTTTTTTAAAAACCGTCACCTATTAAGCAATGAGCCTAGCCGAGTGGGTGGAGGAAAAAACCGGCTTCCCTCACCTCCACGGCTCTACGT
TCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCACGAGCCACCACCGCCTCCGCCACAACCCCTCATCTCCCCCTA
CGTCGTGCCTCCTCCCTCTCGATGGTGCCTTGGCATGCTCCCAATCAATAATTCCTTGAGCTCGTCGGCATACTGCTGTTAACGACCAGCATCAACAACT
GCATGGATCCGGAGGTGGCAGCAACAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGAGCAAATCCGGCAACAGCAAGGGCTCTAGCAGGCGGA
TCCAGCGGTGGGTGCTCTTGCGAGCACATCCGGCAGTAGCAAGGGCTCTAGCAGGCGGATCCAGCGGTGGGTGCTCTCGCAGGCCGATCCAGTGGCGGCA
AGGGCTCTCACGGCGGTGGCGGCGGGTGCCATCGTGGGCTGATCTGGTGGCAGCAAGGGCTCTAGCAGGCGGATTCAGCGGCGGCAAGGGCTCTCGCGGT
GGTGGGTGCTCTTGCGGGCAGATCCAGCAGTGACAATGACTTGTGGGCGGATCCAGCGATGTCGCTCTCTCGCATGGACCTAGGGATGGTAAGCGGCATC
GAAGCCCTCCCCAGCGAGCTATGGCAACGGGCGGAGTTCTCCACTATGATGGCGGCTAGGTGTTGCGATTAGTGTATTGTGTGATTGATTCTATGATGAT
GTGCTTGTGTACTTCGGTTCTCGGATGTTGAGCGATGAATGTTCGATTGTGACGTGAACTTGTGGCTTCTTTGTTTTTTAAAAAATGTTTATTTATTTAA
AGCATCAGCTCGAATTGAGCTAAGCCTGTATTTTTTTTAATTGAGTCGTACAACTCATATAGGTATGTTCTTAATCCGACACCGACATGCTTACTATATC
GTCTCTCGGTTAAGTAAATCCGATATCTATATGAGATTCACAACCAGAACTGAATTAGAGTTATGTAGTAGTGTACCTCTAAGGCCCTTCATAGTGTACC
AACATGGCGGGTTGCTTCACCCCTTCACATAGGCTGTTTGATGTTGTAGAGGAGAGAGGGTGTGGGCCCTCGTTCCTTCGCTGAGGCTTTCGTCCCTTAA
CAAGGACGCGAGGAACTCGCTTGAAAAAGCTGAAACAAACACTTCAAAAAGCTAAAATAAACACATGTGAAGAGCTCGGATTCTGAAAAAGTTAAAACAA
AGCCGGGGGAGAAGGATGCC