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Detailed information on CNT30553747


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30637715Oryza glaberrimaCapsicum annuum7.5233.8688.79107forward
CNT30224357Oryza glaberrimaHordeum vulgare29.7328.0189.13423reverse complement
CNT30396291Oryza glaberrimaTriticum turgidum20.2474.8192.36288forward
CNT30585847Oryza glaberrimaMusa acuminata10.9623.8985.26156reverse complement
CNT30229743Oryza glaberrimaAnanas comosus4.0824.5891.3858reverse complement
CNT30344054Oryza glaberrimaEragrostis tef16.6543.3386.5237forward
CNT30620547Oryza glaberrimaCajanus cajan13.2159.8784.57188reverse complement
CNT30604454Oryza glaberrimaOryza punctata31.9772.5798.46455reverse complement

Expression of CNT30553747

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MIERRKRKKKDIGFQYVWSMNYIIKSNVIKHKYNKNNRDSKS*

>peptide 2 (30 aa)
MKENPTEAIVFVLVDMLFKHLNPLGLRRGR*

>peptide 3 (36 aa)
MRRNSHVQFCSRDATKREPSTITPKEPDFINNIEEE*

Sequence

>CNT30553747
CGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAAGAATAACCAACCCTGTCT
TCCCATTCTGTTCAGTAATAGAATAAAAAATGACAAGAGCCTTATTTTCCCTAAAATCCCTGAAAAAAAGAAGAAATTCTACCTCTTTCTATAAGATTTA
ATGAAAATTGAGAAATCTTTTAATAAAATTGCTATGCTTAGTGTGTGACTCGTTAGTTTTTTTTTAGGGTTCAAAAAGGGGATTAAAAAAATAGAATGAA
CACTACTATGTAATTATAGAAAATGAACTAATAACCAACCTATTGCTTCGTATTGTCGAGATCCTAACTAAGAAACAGTCACTATATGAATAAATACATC
TATCATAAATGAGTAAATCTATCATATACGTGTAGCAACTGCAATTTTTTCTTTAAAAAAATAGGATTCTAAGTTGTGAAGCAAAACTAAAGGGGATGTA
GATAAAAGGAAGGATGATAGAAAGAAGGAAGAGAAAAAAGAAAGATATAGGATTCCAATATGTATGGTCTATGAATTACATCATAAAAAGCAATGTGATA
AAGCATAAATATAATAAAAATAACAGAGATTCGAAATCATAATTTGATTGAAACAAGAAATACAAATTTCAAGGAATAACAAAGAGCGTCCTGAGTTAAT
AAAACTGAGAAATTGACTCGGAAAGAAATTTTTTGGAAGCTCCATTGCGAGATTCAAACCTAACCATTAAAGGAGAAGCAGTGGGAACGACAGAACCTAT
GACTGGATAGGATTTTCTTGAAAAGAATCCCAATACTTCATTGGGTGGGATGGCAGAACAAACCAAAAAAAATTATCTTATTTGATAAGGTTATGAATTA
ACAAATAAGACAGGAAAGAGTAAATATTCGCCCGCGAAATTTTTATTGAATTAGAATACTTTACCGCGATTCAATAAGAGTAAAATAAAAAAAGGAGATT
AAAAAAAAGAATTACATTAAATATAGAATATAGATAAATAAACATACACATCTAGATATATTCTAGATCCTCTTTCTTGACTATATATTTTAGTATTTTA
ATAAATTCAATATTAAAACCCCTAACCTTTCCTATTAATGTGTATCTATCCGTAATATTTTAGAATATTGTGGAATTAGAGAAATTTGCACACTTTCTCA
TTTGATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGCAACTAAGAGAGAACCATCGACTATAACCCCAAAAGAACC
AGATTTCATAAACAACATAGAGGAAGAATGAAGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTG
GATTACGGCGAGGCAGATAGAAG