Detailed information on CNT30553740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005900, E-value = 3e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578303Oryza glaberrimaOryza barthii76.678396.99332forward

Expression of CNT30553740

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LQLVDMSILLILLSPRPGCYTLTPLREIDAPIDQPQARNVLSWPRPCVQCQRMCHAV*

>peptide 2 (72 aa)
MLHPHPLKRDRRPHRSTPGQERPLLATSMCPVPAHVPCCVTTPGLHQPCAPCLRNCDTRARETARVGSDTIL*

Sequence

>CNT30553740
GTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCCCTAGGCCAGGATGTTACACCCTCACCCCCTTAAGAGAGATCGACGCCCCCATCGAT
CAACCCCAGGCCAGGAACGTCCTCTCTTGGCCACGTCCATGTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACTCCCGGTCTACACCAGCCATG
CGCACCATGCCTGCGCAACTGCGACACACGCGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCATTTTGTAACGACCCGCCTCTCCCAGGCCGGGCCCA
CTTACATCTGATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACATGTCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAAT
TTCCCGGTCGGTCACCCATCCCAAATTGCTCCA