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Detailed information on CNT30553681


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191442Oryza glaberrimaSecale cereale80.6866.0486.83873forward
CNT30226205Oryza glaberrimaHordeum vulgare79.383.1486.13858forward
CNT30716337Oryza glaberrimaMalus domestica golden74.7765.2985.04809forward
CNT30722465Oryza glaberrimaTriticum spelta76.8973.6988.7832forward
CNT30596200Oryza glaberrimaOryza meridionalis98.5296.9192.311066forward
CNT30110940Oryza glaberrimaOryza longistaminata80.9632.395.21876forward
CNT30150301Oryza glaberrimaBrachypodium distachyon63.8648.9487.99691forward
CNT30100520Oryza glaberrimaOryza rufipogon63.9669.7687.57692forward
CNT30604148Oryza glaberrimaOryza punctata67.5686.4191.52731forward

Expression of CNT30553681

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRV

>peptide 2 (31 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRRTR*

>peptide 3 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 4 (44 aa)
MPSLSWIFAFTLSIVSDDSTSSVMVLPVRVFTKICIPPLRRRTR*

>peptide 5 (55 aa)
MEGGFLLDVVVSKRAPIFELLASEDETLLVRWDSLLVLDLGLYIVNGIRGLNLKGY

Sequence

>CNT30553681
CAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAGTTTAAACTGCTATGACCCAGCAAATGTTCGGACAGCAGTACAGCACA
TTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGATAATGCAGACACAGGATAACAGTACAGCAGCAATTCCATCAATCAATG
ATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGC
GAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATG
GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCCCTGAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGG
TCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGT
GTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATTCCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGAC
TCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGAATCCCCTCCTTGTCCTG
GATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCCCGG
AGGCGGAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCT
GGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTAT