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Detailed information on CNT30553677


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004873, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30452760Oryza glaberrimaSaccharum spontaneum6.2328.1685.978reverse complement
CNT30370314Oryza glaberrimaOryza glumipatula28.2570.2498.59354reverse complement
CNT30105187Oryza glaberrimaOryza longistaminata23.336.9288.01292forward
CNT30102303Oryza glaberrimaOryza rufipogon20.3550.688.24255reverse complement

Expression of CNT30553677

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LEFSVGSPRFRSSRVVSIGLMNDIVDERERV*

>peptide 2 (55 aa)
MKFSSNSVVLHISHGHVENSEIGSTERRTFSFFAATTPGFMIAYFPAFFTKLLVV*

>peptide 3 (47 aa)
MQQRSQAVTRLRQRWCRRRGVARRWTSRHWLRPPRDRFRVCGVERRR*

>peptide 4 (40 aa)
MKGRGFRYRPVEMFVEERAPDIVAVVAARRGRRRRCAWCR*

Sequence

>CNT30553677
TGTTAGAGTTCTCTGTTGGATCACCTAGGTTTAGATCTAGTCGGGTTGTCTCTATTGGGTTGATGAACGACATTGTAGATGAAAGGGAGAGGGTTTAGAT
ACCGACCGGTTGAGATGTTCGTGGAGGAAAGGGCGCCGGACATCGTCGCTGTCGTTGCGGCTCGACGTGGACGGCGGCGACGGTGTGCTTGGTGCCGATA
GCGGTGATGCAGCAGCGGTCGCAGGCAGTGACGCGGTTGCGGCAACGATGGTGTCGACGACGAGGCGTGGCGCGGCGGTGGACTTCCCGTCACTGGCTAC
GCCCCCCTCGAGATCGGTTTAGGGTTTGTGGGGTGGAGCGGCGGCGGTGACGAACCTCGTCTCTAGTGCCGCCCCGTCCTCCACCCCTTTTTATATGGCA
CAGGGTGAGGGAGGCCCACCAGCCATTGGGCTGGGCGCCCCCGATTAGGGCACGGGTCAAGGCCCCCTTGAGCCGTTGGGCTCAAGGGGAGGGAGATCCA
TCTAACAGAACCATTACTGAGACCTGACATAAGTTATTGTTGCCAAGCTTATCATAAAACTCACAAGCAACTTCAACTTCTGGATGAATTAATTTTTGTT
GAAATTTGAAGGGACACCAATGAAATTTAGCAGCAACAGTGTCGTCTTGCATATAAGTCATGGCCATGTGGAAAATTCAGAGATTGGCAGCACTGAAAGG
AGAACTTTCTCTTTTTTTGCTGCAACTACTCCTGGGTTTATGATCGCTTATTTTCCCGCATTTTTTACAAAACTACTGGTGGTATAGTCTAATAGAGAAA
GTTACACCTCTTCAAAACAGTAACATTTTTATATTTTTCTGAATATTTTATCATTATTCATGAACGTAATAATGTGGATTGCACCGACCCTGAACTCCAC
CTGGGCCAGATGTGTAATGAAACGAGTGGCTACATAGCAATGAAGGAATAAGTTCATTTTAGATCCCTCATCTTTACGTCGGATATGAATTACATCCTTC
AACCGCAATACCAGATATAACTTTTGCAAAACCGGTGTACTCGAGATCCCAGTACATACAATACAATACAATACCATGTTTTAGCTGCGTGACGAGTAGG
ACCCACGTGTCAGCGACCAACGTAACTCTTCTTCCTCCCCTCTTCCCTTTCTTCCCCATCCCTCTTCAGGCGCGATTCAAGGATGATCAAGTTTGTTTGT
GATCGTGGGATGGCGTGATTCAAAGATCTAGTAGATGTTTAATCGGTCTCACT