Detailed information on CNT30553671


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-163

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693865Oryza glaberrimaOryza sativa100.0992.0299.481164forward
CNT30674319Oryza glaberrimaSetaria viridis70.5182.2587.07820forward
CNT30528977Oryza glaberrimaEucalyptus grandis77.1366.9485.73897forward
CNT30191758Oryza glaberrimaSecale cereale78.7660.1486.03916forward
CNT30242826Oryza glaberrimaAvena sativa78.7673.2887.23916forward
CNT30461176Oryza glaberrimaSaccharum spontaneum78.7626.8786.14916forward
CNT30140803Oryza glaberrimaLolium perenne78.7651.1787.77916forward
CNT307928Oryza glaberrimaZea mays78.7676.8586.46916forward
CNT30229013Oryza glaberrimaAnanas comosus78.2557.784.84910forward
CNT3067522Oryza glaberrimaLeersia perrieri77.1372.5784.17897forward
CNT30684712Oryza glaberrimaTriticum urartu78.2535.5687.8910forward
CNT30348745Oryza glaberrimaEragrostis tef77.1380.7485.17897forward
CNT30368619Oryza glaberrimaSorghum bicolor78.1678.7785.37909forward
CNT30596296Oryza glaberrimaOryza meridionalis94.2479.5991.241096forward
CNT30370352Oryza glaberrimaOryza glumipatula100.0998.3198.81164forward
CNT30706353Oryza glaberrimaPrunus avium76.8750.6583.89894forward
CNT30576485Oryza glaberrimaOryza barthii79.6299.3697.19926forward
CNT30116852Oryza glaberrimaOryza nivara98.9796.8999.651151forward
CNT30593897Oryza glaberrimaEragrostis curvula78.6881.4886.45915forward
CNT30174646Oryza glaberrimaVigna angularis73.9582.5385.47860forward

Expression of CNT30553671

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKIC

>peptide 2 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 3 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

>peptide 4 (52 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICIPPLRRRTR*

>peptide 5 (66 aa)
MEGGFLLDVVVSKRAPIFELLASEDETLLVRWDSLLVLDLGLYIVNGIRGLNLKGYGLASESLHKDL

Sequence

>CNT30553671
TTTAATCTGAAATGTAGGCAAATTTGAATGAAGAGTTGTAATGGGTGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTACTTATTAATTAG
TTTAAACTGCTATGACCCAGCAAATGTTCGGACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTTTTCACGAGGAT
AATGCAGACACAGGATAACAGTACAGCAGCAATTCCATCAATCAATGATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGA
ATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAG
CCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCCCTGAGGCGGAG
CACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGG
GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGA
AAATCTGCATTCCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCC
AGCAAAGATCAGACGCTGCTGGTCCGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGA
TAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCCCGGAGGCGGAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAG
CGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATG
GTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGC