Detailed information on CNT30553667


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693616Oryza glaberrimaOryza sativa68.7491.4399.22640forward
CNT30101813Oryza glaberrimaOryza rufipogon26.9653.75100251reverse complement

Expression of CNT30553667

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFLIRHRHAYYIVSRLSKSDIYMRFTTRTE

>peptide 2 (29 aa)
MDPEVAATGGSSASGVWCSHEQIRQQQGL*

>peptide 3 (33 aa)
MFDCDVNLWLLCFLKNVYLFKASARIELSLYFF*

>peptide 4 (71 aa)
KTGFPHLHGSTFAHFLSPYSLPLPSPQSLLHEPPPPPPQPLISPYVVPPPSRWCLGMLPINNSLSSSAYCC*

>peptide 5 (64 aa)
KKPASLTSTALRSLTSSPPTLSLSHLPNPCSTSHHRLRHNPSSPPTSCLLPLDGALACSQSIIP*

>peptide 6 (61 aa)
KNRLPSPPRLYVRSLPLPLLSPSPISPIPAPRATTASATTPHLPLRRASSLSMVPWHAPNQ*

>peptide 7 (37 aa)
MSLSRMDLGMVSGIEALPSELWQRAEFSTMMAARCCD*

Sequence

>CNT30553667
AAAAAACCGGCTTCCCTCACCTCCACGGCTCTACGTTCGCTCACTTCCTCTCCCCCTACTCTCTCCCTCTCCCATCTCCCCAATCCCTGCTCCACGAGCC
ACCACCGCCTCCGCCACAACCCCTCATCTCCCCCTACGTCGTGCCTCCTCCCTCTCGATGGTGCCTTGGCATGCTCCCAATCAATAATTCCTTGAGCTCG
TCGGCATACTGCTGTTAACGACCAGCATCAACAACTGCATGGATCCGGAGGTGGCAGCAACAGGCGGATCGAGCGCTAGTGGTGTTTGGTGCTCTCACGA
GCAAATCCGGCAACAGCAAGGGCTCTAGCAGGCGGATCCAGCGGTGGGTGCTCTCGCAGGCCGATCCAGTGGCGGCAAGGGCTCTCACGGCGGTGGCGGC
GGGTGCCATCGTGGGCTGATCTGGTGGCAGCAAGGGCTCTAGCAGGCGGATTCAGCGGCGGCAAGGGCTCTCGCGGTGGTGGGTGCTCTTGCGGGCAGAT
CCAGCAGTGACAATGACTTGTGGGCGGATCCAGCGATGTCGCTCTCTCGCATGGACCTAGGGATGGTAAGCGGCATCGAAGCCCTCCCCAGCGAGCTATG
GCAACGGGCGGAGTTCTCCACTATGATGGCGGCTAGGTGTTGCGATTAGTGTATTGTGTGATTGATTCTATGATGATGTGCTTGTGTACTTCGGTTCTCG
GATGTTGAGCGATGAATGTTCGATTGTGACGTGAACTTGTGGCTTCTTTGTTTTTTAAAAAATGTTTATTTATTTAAAGCATCAGCTCGAATTGAGCTAA
GCCTGTATTTTTTTTAATTGAGTCGTACAACTCATATAGGTATGTTCTTAATCCGACACCGACATGCTTACTATATCGTCTCTCGGTTAAGTAAATCCGA
TATCTATATGAGATTCACAACCAGAACTGAA