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Detailed information on CNT30553653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 5e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504973Oryza glaberrimaNicotiana attenuata8.8423.5697.67172forward
CNT30300330Oryza glaberrimaTriticum aestivum6.5859.8199.22128forward
CNT30395031Oryza glaberrimaTriticum turgidum12.7532.4297.18248forward
CNT30234810Oryza glaberrimaBrassica oleracea923.1293.14175reverse complement
CNT30661884Oryza glaberrimaTriticum dicoccoides12.7521.2597.98248forward
CNT3016505Oryza glaberrimaZea mays11.6240.4397.79226forward
CNT30215771Oryza glaberrimaHelianthus annuus8.8436.6797.67172forward
CNT30682017Oryza glaberrimaTriticum urartu12.7530.6297.98248forward
CNT30371505Oryza glaberrimaOryza glumipatula6.6352.23100129forward
CNT30154718Oryza glaberrimaPrunus persica9.1525.6994.38178forward
CNT30147862Oryza glaberrimaBrachypodium distachyon7.454.7597.92144reverse complement
CNT30104455Oryza glaberrimaOryza rufipogon8.1722.11100159reverse complement
CNT30576588Oryza glaberrimaOryza barthii15.9970.8499.68311reverse complement
CNT30582488Oryza glaberrimaEchinochloa crusgalli12.7520.4398.39248forward
CNT30604605Oryza glaberrimaOryza punctata5.1943.7297.03101reverse complement

Expression of CNT30553653

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

>peptide 2 (35 aa)
DRSKAQEEISRGRIKKKKREREISRGRRNSPSRRH*

>peptide 3 (38 aa)
MMLSWSFRMPSTSLVSLRDGDGSFSSFPTRYKSVSIVL*

>peptide 4 (46 aa)
MIHQLVALRSGEFSAMGESLTEQCRVEVEGPRVVNFFSRRRNNDGI*

>peptide 5 (83 aa)
MRDSKRTRSAPPREPLEMTEDMTPRSKTRKFVPFGEGAVLPEEMLTEVFLRLPIKSILRFRAACHSSKFQLHRGVHVLAIEAH*

>peptide 6 (53 aa)
MVRAIGKGPAERTVKITSAEPAWQAAGAAGKCLLGRPTALLLVCHASLLSSYF*

>peptide 7 (51 aa)
MTYCSHSMMCVETMWKWHLHHAMASPSCMMLLRQLTTSSMQLHGQSHGAVN*

Sequence

>CNT30553653
GGATCGGAGCAAGGCCCAAGAAGAGATTAGTCGAGGACGAATAAAAAAAAAGAAGAGAGAGAGAGAGATAAGTCGAGGACGGAGAAATTCCCCAAGCCGC
CGCCACTAACCCTAGCTTCCGCCAGCACGGGTGCAGATCAAGTTCCAAATCAACCTGATTGGTCCTCAACTTTGAGGGTAACTTGATGCGAGACAGCAAG
AGGACGAGGTCCGCACCACCCAGAGAACCACTGGAAATGACAGAGGACATGACCCCAAGAAGCAAGACGAGGAAATTTGTACCATTCGGAGAAGGTGCGG
TGCTACCTGAGGAGATGCTGACGGAGGTGTTCCTACGACTGCCCATTAAATCCATCCTTCGTTTCCGGGCTGCCTGCCACTCCAGCAAATTTCAACTCCA
CCGCGGTGTACACGTGCTCGCCATCGAAGCCCATTGATGACCTACTGTTCACACTCGATGATGTGCGTGGAAACTATGTGGAAGTGGCACCTTCACCATG
CCATGGCCTCACCCTCCTGTATGATGCTGTTGCGCCAGCTTACTACGTCTTCAATGCAACTACACGGGCAATCACACGGTGCGGTGAACTGATGACAGGG
AAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGAGTAAGTTCCGACCTGCACGAAAGGCG
TAACGATCTGGGCACTGTCTCAGAGTAGCTTATGGTTAGAGCAATAGGAAAGGGCCCAGCAGAGAGAACAGTCAAGATAACGAGCGCGGAGCCCGCTTGG
CAGGCGGCAGGAGCTGCGGGCAAGTGCTTGCTTGGTAGGCCAACAGCCCTCCTCCTGGTGTGCCATGCATCTCTCTTATCAAGTTATTTCTGACAGCGGG
GAATTCATTGACTGACTTGGCCTTGATTGATGATCCATCAACTCGTGGCTTTGCGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG
CCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGTAGTCTCGCCCTGCTT
CAAAACTACAGGGCGCACGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCATAACGCGTG
GGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGTTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCGGGTAAAGGCTGAC
CAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGCCCAGCACCTCTCTAGTTTCTCTACGAGATGGAGATGGCTCATTCTCTAGTTTTCCTACGAGATAT
AAGTCAGTTTCTATCGTACTTTGAAGTTCAGGAAGGAGTTATTAATTAAGACGAAGAAGAACTGGGTGGGGATATGCCTTTCCCATAACAATGGTCCTCC
CAATCGAATTGTTAAGTATGTTTTTTCCCTTTCGAGAAATGGTGGCGAAGGAACGCTAGCTATATGCTTCACACATGCAAGTCGAACGTTGTTTTCGGGG
AGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTAGTCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCGTTTG
CTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGAATGCAACGAAAAGACCCGGAAATAACAAATAATGAGAAAATTCATTTATA
GACATTTCGTGCTCATTTCAAAATTTCTGCTTAGTTATTCCCATCATCCGGTAACCACAGGATGATCCCAATCTCCTTAGGCCGTGGCGTTGGGTTTTCC
AACGAAAAACAAGAACATTCTTTCACGAACTTTCATGACACTTTA