Detailed information on CNT30553647


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370201Oryza glaberrimaOryza glumipatula10090.9399.911103forward
CNT30101746Oryza glaberrimaOryza rufipogon96.0199.3497.361059forward
CNT30116754Oryza glaberrimaOryza nivara97.8297.9199.631079forward

Expression of CNT30553647

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDLCYWRFCRSQFDDGC*

>peptide 2 (34 aa)
DLTSIYIFPKLSIQAKDEETIIPINMTYNRMHYN*

>peptide 3 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 4 (40 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASS

>peptide 5 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 6 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

Sequence

>CNT30553647
GATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACA
ATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAG
CAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGC
AGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCC
CATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCT
TGGCAAAGGTCTCCCATGGTGCCATTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGG
CCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACCAGTTGCTGCTGCTCAGATTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTT
GCTGATGGTGAGATGAGATGAAAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAA
AAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTCAT
TCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCT
GGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTC
TTG