Detailed information on CNT30553645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Oryza glaberrimaTriticum turgidum13.5825.3581.48162reverse complement
CNT30370286Oryza glaberrimaOryza glumipatula10091.5699.921193forward

Expression of CNT30553645

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDVNCATGDFVAVNSMMVADGEMR*

>peptide 2 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 3 (40 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASS

>peptide 4 (55 aa)
MFALWRLLWPSGWGITFRSPMVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 5 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 6 (34 aa)
DLTSIYIFPKLSIQAKDEETIIPINMTYNRMHYN*

Sequence

>CNT30553645
GATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACA
ATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAG
CAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGC
AGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCC
CATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCT
TGGCAAAGGTGTGTGAGCTTCCTCTGAAACTCTGGTTGTGATGTTTGCTTTATGGAGACTGCTATGGCCAAGTGGTTGGGGCATCACTTTCAGGTCTCCC
ATGGTGCCATTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCC
TGGGATGAAATTTCTGGGATGACCAGTTGCTGCTGCTCAGATGTAAATTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTG
AGATGAGATGAAAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCA
CTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTCATTCAGGTTCAG
CATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTT
TTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTG