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Detailed information on CNT30553641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693390Oryza glaberrimaOryza sativa74.1767.8299.03824forward
CNT30371243Oryza glaberrimaOryza glumipatula75.2567.6995.57836forward
CNT30108528Oryza glaberrimaOryza longistaminata48.0681.0398.5534forward
CNT30100442Oryza glaberrimaOryza rufipogon74.1724.3997.69824forward
CNT30575705Oryza glaberrimaOryza barthii68.7743.3498.82764forward
CNT30117644Oryza glaberrimaOryza nivara68.6843.3898.43763forward

Expression of CNT30553641

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHKSCVCFTSSRLYLLSILYSLLCLIWFLGT*

>peptide 2 (46 aa)
MLLIRVATHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWIFIHDP*

>peptide 3 (54 aa)
MAMTLCYLFVLRPIFKFMTLFMFHYSGCSVYIIQEPCVAMGVQFGFLFMILKKR*

Sequence

>CNT30553641
TAGATGTGAGCCGTTAGATCTTATTTAGTCTCTTTATATAACCAACCAAAAAAAAACAAACGAAAAAAAAAAGAAACAGGAGCGATTCTCCTGTAGCCCT
AGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTATTCCTCTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGTCGCCGGTCGCCACAGCCGTCGTCG
TCCGCAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAATAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATTT
GGTGAATATTTTCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTGTGGAGGGTTCCAACGTTGGAGGAGTTGAGTCGGAGTATCGAATGAGTT
AAGGCAAGTACAAGACGGACTTATGTGATGGACAAAACTGAGTTGTTTTGTTTGGCTTTACTTGCATAATTATTATTCAATTGCTCGTTATTACTGATTG
TATGGCTATGACGTTATGCTACTTATTCGTGTTGCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGGATGTTCTGTTTACATTATT
CAAGAACCATGCGTAGCCATGGGAGTGCAATTTGGATTTTTATTCATGATCCTTAAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTAAGAG
GATATTCACACCTGCCCGGGAGGGAACTACTATCTTTTGACTTCTTTGGTTTAAAAATAAAGTAAATCCAACCCTTCATGTTGGTTTCTTAATGCATAAA
TCATGCGTATGTTTTACTAGTTCAAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGATCGG
CATGGAGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATAGA
ACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCTTT
CTTATAACTGC