Detailed information on CNT30553623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Oryza glaberrimaOryza sativa36.659.610092forward
CNT30673532Oryza glaberrimaSetaria viridis21.5113.7194.4454forward
CNT30338871Oryza glaberrimaEragrostis tef30.688.690.9177forward
CNT30101676Oryza glaberrimaOryza rufipogon29.4817.4510074forward
CNT30496965Oryza glaberrimaDigitaria exilis22.7116.7692.9857forward
CNT30116751Oryza glaberrimaOryza nivara69.3230.63100174forward

Expression of CNT30553623

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LRVVRQSARGDGLTASFLPEMELPARDAIAAVNSREDAKLSR*

>peptide 2 (41 aa)
PAGGAAERPGRRPDGELPAGDGAAGEGRHCCGEFAGGRKAE*

Sequence

>CNT30553623
CCTGCGGGTGGTGCGGCAGAGCGCCCGGGGCGACGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGGACGCCATTGCTGCGGTGAAT
TCGCGGGAGGACGCAAAGCTGAGTAGATAGATGGATAGATAGCCGGTGTACTATCTGCGGCGGCGGCTACACGTACGTGCACACAGACTTAATTCGGCGG
ATGCTGTTAAGGATTTGGAACGCGTAGTCCGCGTGGCTCCCGCGATGGCCG