Detailed information on CNT30553602


BLAST search results

BLAST vs Swiss-Prot:
sp|O80333|POR_MARPA, E-value = 5e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693116Oryza glaberrimaOryza sativa69.440.8199.69322forward
CNT30672815Oryza glaberrimaSetaria viridis18.9725.8193.1888forward
CNT30521311Oryza glaberrimaSetaria italica73.4928.6689.15341forward
CNT30710762Oryza glaberrimaGlycine max18.124.7183.3384forward
CNT30592165Oryza glaberrimaMusa acuminata20.4733.8192.6395forward
CNT30658921Oryza glaberrimaTriticum dicoccoides30.620.9182.39142forward
CNT30362130Oryza glaberrimaSorghum bicolor36.4250.987.57169forward
CNT3038429Oryza glaberrimaCucumis melo17.2425.2483.7580forward
CNT30101150Oryza glaberrimaOryza rufipogon54.9639.1198.82255forward
CNT30575951Oryza glaberrimaOryza barthii29.3131.34100136forward
CNT30585175Oryza glaberrimaEchinochloa crusgalli40.5239.0991.49188forward
CNT30113199Oryza glaberrimaFicus carica31.0333.0384.72144forward
CNT30333083Oryza glaberrimaCynara cardunculus21.7727.3785.15101forward
CNT30726195Oryza glaberrimaLupinus angustifolius28.2322.0281.68131forward

Expression of CNT30553602

Peptides detected in this lncRNA

>peptide 1 (99 aa)
NKPVVAMHPGYSDANVIPVSSWNLRWNSCIVSMLQILLSLYALAPSKLSAPSIIADPFCPRSPPASPRRSPSPALGGTLPARVLVLPVMEPRMMSRRDG*

>peptide 2 (71 aa)
EQARRRDAPRVQRRERDPGLLVESPVELLHRQHVTDLAVLVRLGAVEALRAVDHRRPVLPAEPAGEPPEVA*

Sequence

>CNT30553602
GGAACAAGCCCGTCGTCGCGATGCACCCCGGGTACAGCGACGCGAACGTGATCCCGGTCTCCTCGTGGAATCTCCGGTGGAACTCCTGCATCGTCAGCAT
GTTACAGATCTTGCTGTCCTTGTACGCCTTGGCGCCGTCGAAGCTCTCCGCGCCGTCGATCATCGCCGACCCGTTCTGCCCGCGGAGCCCGCCGGCGAGC
CCCCGGAGGTCGCCTAGCCCGGCCTTGGGAGGGACGTTGCCGGCGAGGGTGTTGGTGTTGCCGGTGATGGAGCCGAGGATGATGAGCCGCCGCGACGGGT
AGTCGGATTTCTTTAGGTCGTCGAGCATGAGGCGGGCGAGGAGGAAGTGCATGACGGTGTAGCTCCCCGCCGCCATCCCCGCCGCCTTTGCCGCCGTCGC
CGCCTTCAGGAAGTCGCGGCACGCCATCACCACGTGCCACTTCCCCGTCTCCGCCAGCGCCTTC