CANTATAdb - search

Detailed information on CNT30553585

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673410	Oryza glaberrima	Setaria viridis	4.69	20.37	95.45	44	forward
CNT30101385	Oryza glaberrima	Oryza rufipogon	41.47	27.61	86.38	389	forward
CNT30116506	Oryza glaberrima	Oryza nivara	27.29	18.22	83.2	256	forward

Expression of CNT30553585

Peptides detected in this lncRNA

>peptide 1 (52 aa)
LVSQSITSLMVKLKQLEHSFFFCSDKTSDRSLVAYSYVLTIFNKVGCKRIRG*

>peptide 2 (36 aa)
MPERGCLFGRVARRKRGRRRRRQRRGWRGRRCRRRRR

>peptide 3 (44 aa)
MDLANCVKKAALSVANCLTMGAVIRSLMSAMSEVKTPWLWVSAM*

Sequence

>CNT30553585
TTTGGTTTCACAAAGTATAACTTCACTAATGGTTAAACTGAAACAGCTTGAACACTCTTTTTTTTTTTGCTCGGATAAAACGTCCGATCGATCTCTAGTC
GCGTACTCGTACGTACTAACAATCTTTAACAAGGTGGGATGTAAGAGAATACGAGGTTGAAATGATGAGGGATCGCTACTCGCTAGCTAGGAAAGAAAAA
CAGTCTTACTAGTTATTATTGCACGGACATAACGAAAGCATATGCGTACAAAAGCCAAGGCCTGAAGACTAAAGAGACTAGGATCAGCTAGCGACGTCAA
GCACCTAGCTCCCTAATTAACGAGCAACGACAGACAGCTGAATGATCAAGCAGAAGCAGCGAAGCCCTCCTCATCGCTGGTGGCGAAGTCGACGAGGCTC
TGGCTGTTGGTCCTGAAGCAGCTGCGGCGGATCTCGCCGACGTTCCTGTCAGTCCTCGGCACATTGCTTAGTTTGACCATGGACTTGGCGAACTGCGTGA
AGAAGGCGGCCTTGTCCGTGGCGAACTGCCTGACGATGGGCGCCGTGATCCGGTCCTTGATGAGCGCCATGTCGGAGGTGAAGACGCCCTGGTTGTGGGT
GAGCGCGATGTAGTAGGCGTTGTCGAAGGCGTCGGGGGTGATCACGTCCAGGTTCTGCAGCCGGTTGGGGTCCTTGGTGCAGTTCAACGCCAGCTTCTTG
GAGAAGGTGTCGTCCTGGCGGCGGGCGCGGTCATCGAAGAAGGCGCAGCGTGTCCTCCCGACGGTGTGCCCGCCGGAGAGCGCCACCAGGTGCCCGGGCC
CGGGAGATCTCCGACGAGGTCCAACGATGCCGGAGCGAGGCTGTCTTTTTGGCCGAGTGGCACGGCGTAAGAGGGGCCGCCGGAGACGACGACAGCGTCG
CGGGTGGCGAGGGCGGAGATGTCGGCGCAGGAGACGGT