Detailed information on CNT30553486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30502658Oryza glaberrimaNicotiana attenuata17.572090.3852forward
CNT3046253Oryza glaberrimaPrunus dulcis22.330.9987.8866reverse complement
CNT30595935Oryza glaberrimaOryza meridionalis62.8463.2791.4186forward
CNT30154412Oryza glaberrimaPrunus persica22.321.6489.3966forward
CNT30576032Oryza glaberrimaOryza barthii100100100296forward

Expression of CNT30553486

Peptides detected in this lncRNA

>peptide 1 (31 aa)
PSSAARACNPSGGIKVVWTLPYGCAPGLAVP*

>peptide 2 (62 aa)
RAQQRELVTRAGALRWCGRCRMAARLGWQCHRWPARSKLRSWASGAWAKALGLTVPRVAGIA*

Sequence

>CNT30553486
GCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGTGGACGTTGCCGTATGGCTGCGCGCCTGGGTTGGCAGTGCCATAGATG
GCCCGCCCGTTCCAAGTTGCGTAGTTGGGCCAGCGGGGCTTGGGCGAAAGCTCTGGGCCTCACGGTTCCTAGAGTGGCAGGCATTGCGTGAGGCTGGCTT
CATAAAATCCACTCTCTACCCTTATTCGTGGTTTGATTGATGAATTACATGGGCAACGCAGGTGATGGCGTTCCTGGCGCGGCCGGACAAGACGTC