Detailed information on CNT30553477


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 1e-40

BLAST vs NONCODE:
NONSTUT000620, E-value = 4e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693219Oryza glaberrimaOryza sativa82.5883.395.31384forward
CNT30676277Oryza glaberrimaSetaria viridis47.5376.2189.59221forward
CNT30369993Oryza glaberrimaOryza glumipatula73.1285.2194.12340forward
CNT30101348Oryza glaberrimaOryza rufipogon10025.8395.27465forward
CNT30576255Oryza glaberrimaOryza barthii97.4228.3196.47453forward
CNT30116557Oryza glaberrimaOryza nivara95.0588.2295.48442forward

Expression of CNT30553477

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTDERHRYNEVQCCTTAHAQRPPRRRRTRCRVDSFWML*

>peptide 2 (29 aa)
TNRISSRIKHLRNINRSRMIISSIGTDAQ*

>peptide 3 (84 aa)
MLHHSTRSETTTEAQDKVQGGLLLDVIIRESTPILKLLASEDKALLVWRDALLVLNLSLHIVNRIGGLNLQGDGLASEGLNEYLH

>peptide 4 (45 aa)
MKSNAAPQHTLRDHHGGAGQGAGWTPSGCYNPREYAHPQAACQRR*

Sequence

>CNT30553477
CACAAACAGAATCTCATCTCGGATCAAACATCTCAGAAACATTAACAGAAGTAGAATGATAATATCATCGATTGGTACCGATGCACAGTGAAGCAAATTG
TACTAGTATGGATAATAGTATCAACACAACTTAGGGACTCTAAACCAGAACACAACACAACCATGACACGATGATATGACAGACGAGCGGCATAGGTATA
ATGAAGTCCAATGCTGCACCACAGCACACGCTCAGAGACCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCCGCGAG
AGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATC
GTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT