Detailed information on CNT30553475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692560Oryza glaberrimaOryza sativa17.4427.1793.37166forward
CNT30100035Oryza glaberrimaOryza rufipogon40.1399.7498.43382forward
CNT30576162Oryza glaberrimaOryza barthii46.0174.74100438forward

Expression of CNT30553475

Peptides detected in this lncRNA

>peptide 1 (88 aa)
ASIALIHQTERAAAPPLHQSPSAPPVPLPRRPSTGAPKSPRRPPPLPSTLVIKVRRRQTTQPLALHCPSPVPSLSPAGHLAAPRRDSR*

>peptide 2 (49 aa)
PPSPSSTKLSAPPRRPSTRARALRRCRCHAVPPPERRKALVVPLHCRPP*

>peptide 3 (65 aa)
MLRISARRRNEVFCFGFEFVAVSVIQIFSITEGMEVHESSRTENCIGGSYFVLHDYTLRFLYPQI*

>peptide 4 (81 aa)
MADNHISLEEVAKYGSVITKEFRSEAEGYKFYNDFPFVDIFLKTRCIFRVTKSRRTVDIAISEFIVARRSVDVENLCEEKK*

Sequence

>CNT30553475
CGCCTCCATCGCCCTCATCCACCAAACTGAGCGCGCCGCCGCGCCGCCCCTCCACCAGAGCCCGAGCGCTCCGCCGGTGCCGCTGCCACGCCGTCCCTCC
ACCGGAGCGCCGAAAAGCCCTCGTCGTCCCCCTCCACTGCCGTCCACCTTAGTCATCAAGGTCCGGCGCCGACAAACCACGCAGCCCCTGGCGCTTCATT
GCCCCTCGCCGGTCCCTTCGCTTTCCCCCGCCGGACACCTCGCTGCCCCACGCCGGGATTCTCGATGATCTCCCCAACGGCCGCCTGCCCTCGTTTTGCA
TGGAGTCGCCGACCCTCGTCTGATTTGGAATCGTAGTCGTTGCCACCTCTCTATTTTTATTCAGAAATTTGGAATGGCTGACAATCACATTAGTTTGGAG
GAGGTTGCAAAGTATGGAAGTGTGATAACCAAGGAGTTTAGAAGCGAGGCAGAAGGATATAAGTTCTATAATGATTTTCCCTTTGTTGATATATTCTTGA
AAACTAGATGTATCTTTAGAGTTACAAAAAGCAGACGAACAGTTGATATTGCCATCTCTGAATTCATTGTCGCCAGGAGATCAGTTGATGTTGAGAATCT
CTGCGAGGAGAAGAAATGAAGTGTTTTGCTTTGGTTTCGAATTCGTTGCAGTTTCTGTGATTCAGATTTTCAGTATTACAGAAGGCATGGAAGTGCATGA
AAGTAGTCGTACTGAAAATTGCATTGGTGGCTCATATTTTGTTCTTCATGATTACACCTTGAGATTTTTGTACCCTCAAATTTAACCGTAGAAGAAATAA
AAGGGTAAGGTAGTTTAAATGTAATAAGATCACAATTCTGACAGTACTGGATATTGCACTGCTAGCTTATAATTCTTCCCCTACAGTTCATTGCCCTGTA
TTTTCAAAACCCATGGAAATTGAATTTCAGTGCTCTGAATTCTCTTCTAAAA