Detailed information on CNT30553466


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RU61|ATPH_ATRBE, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678068Oryza glaberrimaSetaria viridis25.678.4598.51134forward
CNT30617713Oryza glaberrimaSesamum indicum25.676.8490.3134forward
CNT30268703Oryza glaberrimaChenopodium quinoa25.111.7192.37131forward
CNT30632292Oryza glaberrimaVigna unguiculata25.14.3788.55131forward
CNT30198075Oryza glaberrimaPisum sativum24.526.2988.28128forward
CNT30567675Oryza glaberrimaActinidia chinensis21.0712.1588.18110forward
CNT30656987Oryza glaberrimaTriticum dicoccoides25.6710.3898.51134forward
CNT30596058Oryza glaberrimaOryza meridionalis49.4328.699.22258reverse complement
CNT3057337Oryza glaberrimaAmborella trichopoda25.673.682.84134forward

Expression of CNT30553466

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPSLTSWFSSRNNLFPRKRPSFLDSSIRCSRNK*

>peptide 2 (33 aa)
AIKYLVFYLQLLAVSQYLLQLVLQQYLDQLQAQ*

Sequence

>CNT30553466
GAGCAATAAAGTACCTCGTATTTTACCTTCAGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGCCCA
ATAGAAGCAAGCCCTACGGCCAATCCAGCAGCAATTAGTGGAATGCCTAGTTTGACTAGTTGGTTCAGTAGCAGAAACAACTTATTTCCCCGAAAAAGAC
CTAGCTTCTTGGACAGCTCAATCCGGTGCAGCAGGAACAAATGAAACGACTAGTGGTCCTCGGAACCCTACCCGAGCTTATATTCCTTGCTTCAACGCCC
GCGCCTTCCGTGGAAAAGTACTAGTGCTTCTTATGGAGCAAGAAAACGGATGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTCACCCCGTTGCTTGTTGG
GCACTGAACACTTTTCAAGATCTGGTTTTGATAGGACGAAGATTTTTCACTTTCGTGAAGGTCATTCTGAGGTGGAATCGAACCACTATGTTAGGATTTA
GAGTCCAACGTGCAAAGCTAAA