Detailed information on CNT30553408


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520302Oryza glaberrimaSetaria italica49.0281.787.47375forward
CNT30338809Oryza glaberrimaEragrostis tef88.6331.5183.33678forward
CNT30596193Oryza glaberrimaOryza meridionalis57.2557.2595.21438reverse complement
CNT30370968Oryza glaberrimaOryza glumipatula43.483.6396.99332forward
CNT30104253Oryza glaberrimaOryza rufipogon77.3969.6598.14592forward
CNT30116624Oryza glaberrimaOryza nivara94.970.1499.04726reverse complement
CNT30174954Oryza glaberrimaVigna angularis8.2424.6192.0663reverse complement

Expression of CNT30553408

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 2 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 3 (66 aa)
MVSEPTLAVSRARVSQLRRHGAHGWCRPGVVTQHGTCAGTGHMDVAKRGRSWPGVDRRGRRSLLRG*

>peptide 4 (44 aa)
MKAIRCKRAQPGEGGTLQNGIRADSRGFTGACVAVAQAWCAWLV*

>peptide 5 (44 aa)
MVRMAGVDREWLHSMAHALALDTWTWPREDVPGLGLIDGGVDLS*

Sequence

>CNT30553408
GTAACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTT
AAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGT
TGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGCGGGCCCAGCCTGGGGAAGGCGGGACGTTACAAAATGGTATCAGAGCCGACTC
TCGCGGTTTCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTGCGCATGGCTGGTGTAGACCGGGAGTGGTTACACAGCATGGCACATGCGCTGGCAC
TGGACACATGGACGTGGCCAAGAGAGGACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGTAACATCCCGGCC
TAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCC
TGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGC
AGTCTATGACCTATGAAAGCTATCAGATGTAAGCGGGCCCAGCCTGGGGAAGGCGGGACGTTACA