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Detailed information on CNT30553404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza glaberrimaOryza sativa60.9127.4599.3860reverse complement
CNT30678383Oryza glaberrimaSetaria viridis13.0353.896.2184forward
CNT30524653Oryza glaberrimaSetaria italica32.3738.1594.75457forward
CNT30548565Oryza glaberrimaIpomoea triloba11.6134.3194.51164forward
CNT30221870Oryza glaberrimaHordeum vulgare32.2236.7293.85455forward
CNT30143344Oryza glaberrimaLolium perenne27.5517.3997.43389reverse complement
CNT3016498Oryza glaberrimaZea mays11.2635.18100159reverse complement
CNT30104593Oryza glaberrimaOryza rufipogon28.3310099400reverse complement
CNT30576076Oryza glaberrimaOryza barthii91.5728.7799.151293forward
CNT30116696Oryza glaberrimaOryza nivara91.532.5999.231292reverse complement

Expression of CNT30553404

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLMPSRRSDLLNAAISVFLCSPPPLDTIVVDHKRSILSRNSYRKMD*

>peptide 2 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

>peptide 3 (31 aa)
MFSSRPGSPGSTTVRPNHSQNLSLILAQKER*

Sequence

>CNT30553404
TAGTTTTTTCTATTTTGCTTGTAAATCGGCTCTTTTTGGCATCCCAGTTCTGAACTTTTTCATCTCGCCTAGTGGAACTTGAGACTTTTTCCAGTATCTT
TATCCACCAGTAGGACTTTCACTACTTTCCCAAGTAAAGCTAGTGTTAAGAGACTGGATTGTAGAAGTGTTGACTGACTTGACTGGAAATATAATATGGA
AAGACTGATGGACTGACTGAAGTGGCTATTGACTTAAGTGGCTATTTCCTGATTCCGATATGGCGTCCTGAATCCGATATTGCTTGATTGTATGTTGATG
CCCAGCCGAAGAAGTGACTTGCTTAACGCAGCAATTTCTGTTTTCTTGTGCTCTCCACCTCCGCTTGACACTATCGTAGTAGATCATAAGAGAAGTATTC
TTTCAAGAAATTCGTATAGAAAGATGGACTAGCTCGAGAACAAGCAACGGATTGAGCGCACTAGCGCGAAAGTGTTAGCACGCGCATCTGTTTTCTTGCT
CCTTGGCTTCAAACAATCGATTGAATCTGGATTCCTTTGCTTATCCTTCCTGGCTATAGTCTCTCTTGTGCCTTCGGCAGTTCAGTTAAAGATTTCTGTA
TCAGCAGTTTGTTTCCCCATTTGCTCAAAGAACGCATAAAACCTGTTCCCTCACCGTATCAAAAGATCAAGCGGAAGAGTCCTCTTCTTCAAGAAGAGTT
TTTCATTTCACTCTTCCGCAGCAATGCCTGGGCAAGAAAACAATATGAGCAAATCCGCAAAACAATATCATAGTAAACGGTATGTGCTGGTTGGATAGAG
CAATCAGTAGTTGACGTTCGAACCAATCTTCTCTCTAGTAGACTTTAGATTCAGTCGTCCGTTTGTTTTGTTTTGAATTGACATAGAGAAATTTTCCCAC
TACGTAATTAAGGAATAGGTGGCGAAGGCCCTTGGCGGACTATATATAAAGGAAAGGGGTTATTTTTCCTTTACGGCAATAAGAGCTGATTCCCTTGCTT
GTAGTTTTTGATCGATGGAGTGTATTTAACATATTTAAGAGTGGTTAGGAGAGAGAATCAATGTTTAGTAGTAGGCCCGGTTCACCAGGTTCTACCACTG
TTCGGCCCAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGC
TGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTAGTCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCACATGGTC
AAAGCCCGGGGTAAGGCTAAAGGAGATTTCTTGAAGCCAACATCCAGCCTTAGTGGCCCCTCTCTGATAAGGTTTTAAAGTTTTCAAAACGAAAATCAAA
TGATCCGAAAAT