Detailed information on CNT30553402


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza glaberrimaOryza sativa72.6659.65100380forward
CNT30520501Oryza glaberrimaSetaria italica23.525.1294.31123forward
CNT30640424Oryza glaberrimaNymphaea colorata23.1414.5681.82121forward
CNT30190473Oryza glaberrimaSecale cereale22.5615.6393.22118forward
CNT30289517Oryza glaberrimaTriticum aestivum52.249.3789.38273forward
CNT30225926Oryza glaberrimaHordeum vulgare22.5617.3890.68118forward
CNT30387764Oryza glaberrimaTriticum turgidum52.230.7889.38273forward
CNT30569510Oryza glaberrimaActinidia chinensis12.6231.7392.4266forward
CNT30592144Oryza glaberrimaMusa acuminata11.8526.9695.1662forward
CNT30436608Oryza glaberrimaAegilops tauschii62.3345.3488.96326forward
CNT30657898Oryza glaberrimaTriticum dicoccoides52.237.3588.64273forward
CNT30139319Oryza glaberrimaLolium perenne22.5610.0995.76118forward
CNT30228928Oryza glaberrimaAnanas comosus20.0826.9292.38105forward
CNT30653715Oryza glaberrimaRosa chinensis25.8123.1685.93135forward
CNT30214941Oryza glaberrimaHelianthus annuus14.7230.284.4277forward
CNT30680357Oryza glaberrimaTriticum urartu29.0653.5287.5152forward
CNT30596194Oryza glaberrimaOryza meridionalis72.0886.6799.2377forward
CNT30370054Oryza glaberrimaOryza glumipatula72.6672.6699.21380forward
CNT30109688Oryza glaberrimaOryza longistaminata70.5569.62100369forward
CNT30331328Oryza glaberrimaDioscorea rotundata52.253.2281.32273forward
CNT30101372Oryza glaberrimaOryza rufipogon72.6650.4100380forward
CNT30576241Oryza glaberrimaOryza barthii72.6657.32100380forward
CNT30116534Oryza glaberrimaOryza nivara72.6687.96100380forward
CNT30113851Oryza glaberrimaFicus carica11.8522.3896.7762forward

Expression of CNT30553402

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PGRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 2 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 3 (58 aa)
RDVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

Sequence

>CNT30553402
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGC
CGAGGGTGCCGACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAA
CTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGC
TCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTAC
CTCTCTCTTCTCTGATGGATGTGGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAAACCGGCCCA
GGTACAAGAGAAGAGAAGGAAAG