CANTATAdb - search

Detailed information on CNT30553387

BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JBZ8|HCT1_ORYSJ, E-value = 8e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692993	Oryza glaberrima	Oryza sativa	46.87	49.7	99.28	419	forward
CNT30676466	Oryza glaberrima	Setaria viridis	27.85	49.11	87.15	249	forward
CNT30465762	Oryza glaberrima	Saccharum spontaneum	40.83	57.03	85.75	365	forward
CNT30595784	Oryza glaberrima	Oryza meridionalis	14.54	57.02	99.23	130	forward
CNT30370065	Oryza glaberrima	Oryza glumipatula	46.98	49.53	99.76	420	forward
CNT30101295	Oryza glaberrima	Oryza rufipogon	31.99	46.58	100	286	forward
CNT30576026	Oryza glaberrima	Oryza barthii	37.14	44.03	99.7	332	forward

Expression of CNT30553387

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRWLWIGYHPCSRLGGQTPALHRRCHQDP*

>peptide 2 (92 aa)
CHVFLVRTTLPCSFTEYSTFSSLLIPILNENKKTAHYWLLTSSHGCGDGQISLQAKVQENVARQFAQQEQEHSPHDSLEGILPENSSSTTSP*

>peptide 3 (48 aa)
MAKYPCKLRYKRMWPDNLLNRSKSIAPTTHLKVFYLRTLALQLLPDIT*

Sequence

>CNT30553387
TGTCATGTATTTTTGGTAAGAACAACACTGCCATGTAGTTTCACAGAATACAGCACCTTTTCTTCATTGTTGATTCCTATCCTAAACGAAAACAAAAAAA
CAGCTCATTATTGGTTGCTCACATCGTCACACGGCTGTGGTGATGGCCAAATATCCTTGCAAGCTAAGGTACAAGAGAATGTGGCCAGACAATTTGCTCA
ACAGGAGCAAGAGCATAGCCCCCACGACTCACTTGAAGGTATTTTACCTGAGAACTCTAGCTCTACAACTTCTCCCTGACATAACATAAGTAGTCTGCTT
ACACCTCGAAGATCAGCTTCCTGAACTTCTCCATGTGCTCAGCCTGCAATGAGATGGCTATGGATAGGCTACCATCCTTGTTCGCGCTTGGGAGGACAAA
CGCCAGCCCTTCATAGGCGATGCCACCAGGACCCATGAACACTGGTCTTCCCCATCCAAAATCGGCATCATGAATTGGCAAGCGCACCCAGCTGGTGAGC
CCGAGGTTCGGACACCGGAAAGCTGCAGCTCCAGGTAGTCCAATGCTGAGCGGCAGTAGCTATCGTTCATCCTATCTAGCGCCTCTTGGATGACTGCTGC
TCCATCTGCCAGCCCACTGGTCACCTTGCCTGCCTCAGCAAGTGGAGTGGCGGTGAAAATGACATTCCCAAAGTAACCTTCTGGAAGTGGAGGCTGCAAC
CGTTGTCGCCCATCAGTGGCACAATACAGCTTAGTGGGCTGTTCAGAAGGCAGGCCACGTGCAAGAGATACGCATCGCCAGACATGTGCAGCAAGAACTG
CATATGTGCTGAAACGTGGTGCACCTTCTCCTGATGGGAGCTGCGAACGCAGTCGACCAAGGTCTGAGCGGGTAAGCTTGAAAATGTCCACAGC