Detailed information on CNT30553379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101412Oryza glaberrimaOryza rufipogon77.894.898.28638forward
CNT30576243Oryza glaberrimaOryza barthii93.1752.7396.34764forward

Expression of CNT30553379

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFLVLAYSPKVSAHQNIIGNHYKQNGGKTYTIP*

>peptide 2 (30 aa)
FLVVAVATPRVHLPPSAIVAASLPVEPVPQ*

>peptide 3 (55 aa)
MAYIIMNFLQFEDTFQCFHQINIDIFLFLQYGGEYTHVSSTGIFSKSICSSEYNR*

>peptide 4 (57 aa)
MFKAQMKQVFLMSDLVGLLSYYIYPGIEITQDANGITLCIQNVNSTWHHPKGSSEIL*

>peptide 5 (98 aa)
FSRSSGNTTRPPSSLRHRRCLSSCRASTAVNHACVCLPPLPIFPPRMRISYPVPEERLRAQHLHVCRASRLIVGVYVDNLISTGCSSKKKKSTCSRLK*

>peptide 6 (36 aa)
MRMELHCAYKMLIVHGIILREVRKYCSTTLVWHFIG*

>peptide 7 (39 aa)
MPASACLLFQFFLPGCESPIPSPRSDSEHSIYTCAELRG*

Sequence

>CNT30553379
TTTTTAGTCGTAGCAGTGGCAACACCACGCGTCCACCTTCCTCCCTCCGCCATCGTCGCTGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGC
CTGCGTCTGCCTGCCTCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCTCCTATCCCGTCCCCGAGGAGCGACTCAGAGCACAGCATCTACACGTGTGC
CGAGCTTCGCGGTTGATCGTCGGCGTGTACGTTGACAATCTCATCAGCACCGGCTGCAGCAGCAAAAAAAAAAAATCGACATGTTCAAGGCTCAAATGAA
GCAGGTATTCCTCATGAGTGACCTTGTTGGCCTCTTATCTTACTATATATATCCGGGCATCGAGATCACCCAGGATGCGAATGGAATTACACTGTGCATA
CAAAATGTTAATAGTACATGGCATCATCCTAAGGGAAGTTCGGAAATATTGTAGTACTACATTAGTCTGGCACTTTATTGGATAACTACGTGGTGGCATA
TTTCAATAGGCAATTTTACAAATGCTATATCTCTAATTCAAGCACTAAGTAATGGCATATATCATAATGAACTTCCTTCAATTTGAGGATACATTTCAGT
GCTTCCATCAAATAAACATAGACATATTTCTTTTTCTCCAGTACGGTGGAGAATATACACATGTTTCTAGTACTGGCATATTCTCCAAAAGTATCTGCTC
ATCAGAATATAATAGGTAATCATTACAAACAGAACGGGGGGAAAACATACACCATACCATAAAATTCAACAATATTTGCAAGCTTGACTTCCTCTATTAA
TTTCTCCTGCCACACGTTAG