Detailed information on CNT30553350


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000867, E-value = 4e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693943Oryza glaberrimaOryza sativa63.8257.1499.26404forward
CNT30596942Oryza glaberrimaOryza meridionalis65.0937.4595.15412forward
CNT30371382Oryza glaberrimaOryza glumipatula62.456.9296.46395forward
CNT30117852Oryza glaberrimaOryza nivara63.8247.798.51404forward

Expression of CNT30553350

Peptides detected in this lncRNA

>peptide 1 (67 aa)
KKQERFSCSPSRRTSCALPPPLLFLSSPAPPLVQPSPVATAVVVRSRSLEGGREGREEQEGRKEGEI*

>peptide 2 (78 aa)
KRNRSDSPVALAAAPPALCRRRCCSSLRRRRRWCSRRRSPQPSSSAADRWKEGEKAEKNRKEGKKGKFDRRREIWGIW*

>peptide 3 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

Sequence

>CNT30553350
AAAAGAAACAGGAGCGATTCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTCTCTTCGCCGGCGCCGCCGCTGGT
GCAGCCGTCGCCGGTCGCCACAGCCGTCGTCGTCCGCAGCCGATCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAA
ATTTGATAGAAGAAGGGAAATTTGGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTACCTAATGACATCGATC
GGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATA
GAACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTCACGTGGAATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCT
TTCTTATAACTGCCTGTCGTGATGTCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTAGGACTTAATTTTTGAGTGTATTTTGGTGTGG
CATTCTAGGTACGTGGTTACCTGGGGTGTTACA