Detailed information on CNT30553335


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004778, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692932Oryza glaberrimaOryza sativa90.9874.0599.52625forward
CNT30596075Oryza glaberrimaOryza meridionalis36.3946.8295.6250forward
CNT30370058Oryza glaberrimaOryza glumipatula86.03100100591forward
CNT30109643Oryza glaberrimaOryza longistaminata92.5897.495.44636forward
CNT30101323Oryza glaberrimaOryza rufipogon90.8310099.36624forward
CNT30576161Oryza glaberrimaOryza barthii99.4299.13100683forward

Expression of CNT30553335

Peptides detected in this lncRNA

>peptide 1 (76 aa)
ITCNSSARALGRPERERFRPATSWSPLFYPSLRRPEIYACLLVSCEFMRKHGYLALLLHALVLISRCMHGILVNPD*

>peptide 2 (34 aa)
MGHVASSFCLFIFRLFMLFDCSLLNLYGCTQLLT*

>peptide 3 (34 aa)
MHACVNDVYRFQEMKCSLLLGQVASSVGWSHAHC*

>peptide 4 (36 aa)
MWQAASVYLSFVCSCCLIVLYLICTVVPSSLRSCRH*

>peptide 5 (44 aa)
HLQLQCESPWATREGEVPACYLLVSSLLSKFEKARDICMLACIM*

>peptide 6 (31 aa)
SLATPVREPLGDQRGRGSGLLPPGLLSSIQV*

Sequence

>CNT30553335
ATCACTTGCAACTCCAGTGCGAGAGCCCTTGGGCGACCAGAGAGGGAGAGGTTCCGGCCTGCTACCTCCTGGTCTCCTCTCTTCTATCCAAGTTTGAGAA
GGCCAGAGATATATGCATGCTTGCTTGTATCATGTGAGTTCATGCGCAAGCATGGATATCTAGCTCTATTACTGCATGCATTGGTGTTAATTAGTAGGTG
CATGCATGGCATCCTCGTCAATCCTGATTGATGTTTTGAACAACTGGTTATGTCTTTCACTTCATGCACGCGTGCGTAAATGATGTATATAGGTTTCAGG
AGATGAAGTGCTCACTACTGCTCGGGCAGGTAGCTAGCAGTGTCGGCTGGAGCCATGCACATTGCTGATAGAGGCCGGCGAGCGGCATTGTTGCCGGCTG
GAGAGAGGCTGGCCTTCACGCGGTGAACCAAGCTAGGATAGAAGAACAAAAAATGGGTCATGTGGCAAGCAGCTTCTGTTTATTTATCTTTCGTTTGTTC
ATGCTGTTTGATTGTTCTCTACTTAATTTGTACGGTTGTACCCAGCTCCTTACGTAGTTGCAGGCATTAACTACGTACTCTGCGGTGTTGAAATCTATGG
AACTTCGTTTACGAGCCGAGCTTCATAACTGATCTGTGTCTGATGTCATTCAGAAAGTTTCTTATCTCAGTTGGATATTTATTGTGT