Detailed information on CNT30553328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006661, E-value = 2e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693056Oryza glaberrimaOryza sativa28.1865.699.27410forward
CNT30101480Oryza glaberrimaOryza rufipogon39.1152.0699.12569forward

Expression of CNT30553328

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDRTPASSSSSLPVSSAQPRVRVAVPVDPGHLRPSHCAMIVTKTLGARPPKETS*

>peptide 2 (31 aa)
MRSPELEDMAGSSEDTHAKRTTTRTHRCEKQ*

>peptide 3 (46 aa)
MNEGQRQTPTAARLGSTSATALRWSSAAEKGRPRCSSTARTRRRRR*

>peptide 4 (77 aa)
MTSSMTSSPAMALNHEVAGARGHGRVFRGYPCEEDDDANSPVRKTMTDNDERRPATNSNGGSARVNLGDGAPMVFGG*

>peptide 5 (52 aa)
MNSAKGRKLDFSAGLLLLGPIERGTQSRLRQREGEGCRLRGDWAKKERGLFLF

Sequence

>CNT30553328
AGCAAACTCAACTCTTCTTCCTCATCATGTTTCACTAAGAATTAGACCAAGAACTTCACTGTAGAGCCAAGAACATCCTCCTCAATCCTTTCAACCGAAG
ATGTTTAATCCATTGCTTGATTTCTCTGGTGAGCTTCGCTGCATTTCAACCATGGCAACGTAATCTACACACCATACCTAATATTTTCGTATTCAATATT
CTGCATTTTCCATGGATCGAACACCTGCGTCGAGCTCGTCGTCGCTCCCGGTGTCCAGTGCGCAGCCGCGGGTTCGCGTCGCCGTTCCCGTCGACCCAGG
CCATCTCAGACCAAGCCACTGCGCCATGATTGTCACCAAGACCCTAGGAGCAAGACCACCGAAGGAAACGAGCTGAGGCACCGTCGTTAAAGAGATCGAG
CCTTTCTTCTTCAACTCCGGCCGCCGGCGTCAATCTTCAATTCCCGCTGCTCTGCTCTCCATCTACCGGACCGTGCTGTCACCGTGAAGCCGACATCATC
CTCCGCCTTCAAGCCGTTCCGCGAGCTGCTGCTGCCGTCCAAGCCTCGCCAACACCGTGCTTCTGACCGGAAAACTAATAAAAGGATTTATGACGTCATC
GATGACATCATCGCCGGCCATGGCTCTGAACCATGAGGTCGCCGGAGCTAGAGGACATGGCCGGGTCTTCCGAGGATACCCATGCGAAGAGGACGACGAC
GCGAACTCACCGGTGCGAAAAACAATGACGGACAACGATGAACGAAGGCCAGCGACAAACTCCAACGGCGGCTCGGCTCGGGTCAACCTCGGCGACGGCG
CTCCGATGGTCTTCGGCGGCTGAAAAGGGGCGGCCGAGGTGCTCCTCCACCGCGCGAACCCGACGGCGACGACGGTAAGCGGCGACGGCGACCACAACCC
CGGCGCGACGCGGCTGGAACGACGACAACGACGGCGGCGGCTAGGGCTACGCGGTGGCAACGCTACGGGCAACGGTAGAGCTCGGAACTTGAGGCAAACG
GAAGAGGACGACTTAGGGATGCTTTATATAGGCACGGGTGAGAGAGATCGAACTCAAAACGAGAGGATTTTAACCGGAAAATCCGAGGGTTAGTTTGGAG
AGGTAAACTCAAAAACGAGTTTGACTCGGATAAAATACAAGGAATTAGGTTCCGATTCTTAGGAAAAACGAGAGAGGAAGATAAAGGAAACATTTCCCCT
CAACTAATTTTCGGAATGCACGAGAGATAAGGCCGGATTTGGATGGGAAAAACCTAGCCCACTCGGTCTCAGTTCGGCTGTCTAGAGGTTGAAGATGAAC
AGTGCAAAGGGACGAAAATTAGACTTTTCGGCTGGGCTTCTACTTCTTGGCCCGATTGAAAGAGGGACACAAAGCAGACTTCGACAGAGGGAGGGAGAGG
GCTGCAGGCTGAGAGGAGATTGGGCCAAGAAAGAGAGAGGACTTTTCCTGTTTCG