Detailed information on CNT30553308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Oryza glaberrimaOryza sativa45.1222.11100199forward
CNT30101573Oryza glaberrimaOryza rufipogon10052.0799.77441forward

Expression of CNT30553308

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKGEFMPSSFTIMSAPAERREKAIIPERRYYPSI

>peptide 2 (30 aa)
MYRYNSAAFILLLPKEEIHVLEGVKLLTSF*

>peptide 3 (30 aa)
SYFRSLYINAAGWPGCRSIYLHFKVSYSHV*

Sequence

>CNT30553308
TCTTATTTCAGATCATTATATATTAATGCTGCTGGGTGGCCAGGATGCCGTAGCATTTACCTACACTTCAAAGTAAGTTACAGCCATGTGTAAAAAGTAT
TGGAAGCCATCTGGTGCGAAGTAATGTACAGGTACAACAGTGCAGCGTTTATCTTACTGCTACCAAAAGAAGAAATACACGTACTTGAAGGAGTAAAGCT
TCTGACATCCTTTTAAAAATAAAAGCAACTCAAGATCTAGCATACAGTTTGTTTGCTAAATGCATCTCTGTTGATTCATTTCCATAACATTCCTACTGCC
TCTGTTGGAAAAAAAGAGGAAAAGTGAAAGCACCTAAATGAAGGGAGAATTTATGCCATCTAGTTTTACCATCATGAGCGCCCCAGCTGAGAGAAGAGAA
AAGGCCATAATTCCAGAACGACGATATTATCCTTCAATTAG