Detailed information on CNT30553284


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690536Oryza glaberrimaOryza sativa43.8133.4488.89216reverse complement
CNT30369160Oryza glaberrimaOryza glumipatula43.8148.3289.35216reverse complement
CNT30107943Oryza glaberrimaOryza longistaminata43.8123.3588.89216forward
CNT30102734Oryza glaberrimaOryza rufipogon24.7511.1288.52122forward

Expression of CNT30553284

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SMVRQQLGQKLRENLRRLHLLLSYLLLLRTRQRH*

>peptide 2 (34 aa)
MKKETTCSTLLSLLVICPGCHQYAHPPLEATPFV*

>peptide 3 (52 aa)
MTVSRNIRKADEEGNNMQHITVPFGYMSRMSPVCTSTLRSNAICLEPLNYGH*

>peptide 4 (29 aa)
MATNVNSCCHIWRLLPRILLLYMKLESRL*

>peptide 5 (55 aa)
FNGQATTGTKIKGEPPQIASSVELSSATQDKAKALAIAAEDSPSASPSPPTKSIP*

Sequence

>CNT30553284
TTCAATGGTCAGGCAACAACTGGGACAAAAATTAAGGGAGAACCTCCGCAGATTGCATCTTCTGTTGAGCTATCTTCTGCTACTCAGGACAAGGCAAAGG
CACTAGCAATAGCAGCAGAAGATAGTCCATCAGCATCCCCATCACCGCCTACCAAAAGCATTCCCTAAAAAAGGCCTGCAGCCTCAGCCTCAACCTCGCT
GCTAAGAAACTAGTCAAAGATGACAGTCAGCAGAAACATAAGAAAAGCGGATGAAGAAGGAAACAACATGCAGCACATTACTGTCCCTTTTGGTTATATG
TCCAGGATGTCACCAGTATGCACATCCACCCTTAGAAGCAACGCCATTTGTTTAGAACCTCTGAATTATGGCCACTAATGTAAATAGCTGCTGTCATATA
TGGCGTTTGCTTCCTAGAATCCTTTTGCTTTACATGAAACTGGAATCCAGACTATGACCAAGCACTTATGGTTGGAATCCTATAACTCTTAAT