Detailed information on CNT30553279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END8|RR8_ORYNI, E-value = 3e-73

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30438367Oryza glaberrimaAegilops tauschii6.8930.5893.2474forward
CNT30351320Oryza glaberrimaEragrostis tef22.81100.4196.73245forward
CNT30364284Oryza glaberrimaSorghum bicolor5.9625.795.3164reverse complement
CNT30434619Oryza glaberrimaPapaver somniferum15.9225.5285.96171forward
CNT30576477Oryza glaberrimaOryza barthii25.8860.57100278forward

Expression of CNT30553279

Peptides detected in this lncRNA

>peptide 1 (60 aa)
GTFFLLFRKSSSFFERLSLSLFMLRIETNDSNSSTPTNQSTCCTNFTNRSSYFHISVFLS*

>peptide 2 (44 aa)
MLYKFYEQKLLFSYFRIPFLNYEFTLLEKNKSLCLNFRTLNFLP*

>peptide 3 (63 aa)
RVLFFYFLESQVLFSKDYPCLCLCFGLKQMTLIRPRLRISRHVVQILRTEALIFIFPYSFLKL*

>peptide 4 (62 aa)
MMVSFSRRTQNIPLGRASITKPSKVIFASLGFFFLSYFSFLSYFFLLFFFFYLKIKKRCIFV*

Sequence

>CNT30553279
CGGGTACTTTTTTTTTACTTTTTAGAAAGTCAAGTTCTTTTTTCGAAAGATTATCCCTGTCTTTGTTTATGCTTCGGATTGAAACAAATGACTCTAATTC
GTCCACGCCTACGAATCAGTCGACATGTTGTACAAATTTTACGAACAGAAGCTCTTATTTTCATATTTCCGTATTCCTTTCTTAAACTATGAATTTACTC
TTTTGGAAAAAAATAAGTCTCTTTGTTTGAATTTTAGAACTTTGAATTTTTTACCCTAGAAAAAAAAAGAAAAACCTAACCCTTTGAATCTTTGGTATCC
TTCAAATCTTCGGTATCCTTCGAGTCTTCGATATGCTTCGAATCCTTATGGAGAAATCTATAAATTATACGCCCCTTGCTTGAATCATAACGACTTACTT
CAATTTTGACCCTATCCCCCATCAGTATTCGTATAGAACTAGACCGGATCTTTCCTGAAATATAGCCCAGGATGATGGTGTCATTCTCTAGGCGAACGCA
GAACATTCCGTTGGGTAGGGCTTCCATAACTAAACCCTCGAAAGTAATTTTTGCTTCTCTCGGGTTTTTTTTTCTCTCCTATTTTTCTTTTTTGTCATAT
TTTTTTCTCCTATTTTTCTTTTTTTATTTGAAAATAAAAAAACGTTGTATTTTTGTTTGAAAAATAGGAAGTTCAAGATAGAATTTGGGTACTATAACTA
TAGGTGGGGCGATTACCGCTATAGGCGGGGCGATTACCATATATAACATAAGACTTCTCCCCCAATTCTGTTTAGTCGAGCTTCTCGATCTGTCATTATA
CCTCGAGAAGTAGAAAGAATAGCAATTCCCATTCCGCCCAAAACCTTAGGAATTCCTTGATAGTTGGCATAAATTCGTAAGCCAGGTCGGCTGATACGCT
TTAAAAAGGTTCTAGTTCTATATATTCCCTTTCTAGTCTTTCTCTTTTGATGTCGCAAAGTTGAAACCAAGAAATATCTGTTACTTTCCTGATGTTTCCG
AACACTTTCAATAAAACCCTCTCGTAGAAGTATTTTAACAATGTTTTCGGTAATATTTGTAGATACTACCCGAA