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Detailed information on CNT30553271


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595889Oryza glaberrimaOryza meridionalis54.5999.4996.74583forward
CNT30369888Oryza glaberrimaOryza glumipatula71.8210099.35767forward
CNT30100659Oryza glaberrimaOryza rufipogon36.2498.9898.97387reverse complement
CNT30575838Oryza glaberrimaOryza barthii10073.31001068forward
CNT30116241Oryza glaberrimaOryza nivara53.2810098.95569forward

Expression of CNT30553271

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEDTDQELCTVAVEMMSSGKLKPCRQLLFYQDSLHREASMKMVHV*

>peptide 2 (29 aa)
MYFCRVRVQLIDLRMFPVTTCEAGNLPVR*

>peptide 3 (84 aa)
RAPSYSTSISWKSLRSNPSLTPQRFPDSKSPSAPQLPSPHIYTRTPSPLSSLHDPSSLTFLSCLSQELHFLYPPLHRANPMHTP*

Sequence

>CNT30553271
GCGAGCGCCCAGCTATAGCACATCGATCTCTTGGAAAAGCCTGAGATCAAATCCCAGCTTAACTCCCCAAAGATTTCCTGACTCCAAATCTCCATCCGCT
CCGCAGCTACCTTCTCCCCATATATACACGCGCACTCCCTCCCCCCTCTCCAGCCTCCATGACCCCTCCTCGCTCACCTTTCTCTCTTGCCTGAGCCAAG
AGCTACACTTTCTATATCCACCACTTCACCGTGCAAACCCCATGCACACGCCTTGACAGAAGCTGAGCTAGCTTCTCCTGCGTCGCTGCAAGCTGCTACT
TTGGTTCGTGACTGAAAGCCAAATGGAAGATACGGATCAGGAGCTATGCACCGTTGCGGTGGAGATGATGAGTTCAGGAAAACTAAAGCCATGTAGACAG
TTGTTGTTCTATCAAGACTCCCTTCACCGAGAAGCATCCATGAAAATGGTTCATGTTTAGCAATAGCACGGTGTTATCCTAACTGAGCTTTTCTTCTAGC
CACCATCCACATCCTTCTTCAAAACCTCAACATCACTTTGTGTGGGAATTAAAAGGAATTGGTCTTCTTGACCTTGCAAGACCTTTTCTTGACCTTGTAA
GACCCAACATCGTTGTGTTGCTTTTCTTGTTTCTTATTTTTCAATTTCATCCACCTCTTCTTTCTACCTCCCATCTTTCTCCTAGTTCTTGCCTTCTCTC
TCGGTCTATCCCTCCTGAGCTGTATTGATCACTTTCTATGTTATTTTCTCGATGTTTAAAAGAAAATTGATTTTGTTTAGCAATATACGAAGAGATTGTG
CAATTCTAGTATATCTGTAAATTGTAATATTATTGCTTGCGTGATATAATTTGTAATATTATTATTGCTTGCGTGATATAATGTATTTCTGCAGAGTCAG
AGTGCAGCTGATAGACCTAAGGATGTTTCCTGTTACCACATGTGAAGCTGGAAATCTACCTGTAAGGTAGCTTGACATGTATCACATCATGAATGGAATA
AGTTCGCTGTGTGCCACTCGATAACGATTTGGATCTTTGCCGCCTTGCTCACTGTTGGGAACAAGTAC