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Detailed information on CNT30553269


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000218, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694650Oryza glaberrimaOryza sativa77.1975.3885.081381forward
CNT30596548Oryza glaberrimaOryza meridionalis41.8741.1386.38749reverse complement
CNT30369450Oryza glaberrimaOryza glumipatula71.1645.4294.191273forward
CNT30107323Oryza glaberrimaOryza longistaminata76.5286.3295.181369forward
CNT30102110Oryza glaberrimaOryza rufipogon72.6762.8383.231300forward

Expression of CNT30553269

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTKLMNIGMSWIAGKAYIYCSKINMNLFE*

>peptide 2 (50 aa)
MTGVSQPVLSLKTSGTPELLSLLITLRSERMRMRIHGTGATDVSNRKALP*

>peptide 3 (50 aa)
PLSLSCHGRPSPTTGRSPPPLILFLFPYAIAFASTRRIHFSYFPSPSTLR*

>peptide 4 (74 aa)
SSLSLLPWPAITHHRPISSSFDPLSISLRHRVCLDEENPFFLFPLSLHLEINRHHHLLLSPELSSCRRRSGLLP*

Sequence

>CNT30553269
CTCCTCTCTCTCTCTCCTGCCATGGCCGGCCATCACCCACCACCGGCCGATCTCCTCCTCCTTTGATCCTCTTTCTATTTCCTTACGCCATCGCGTTTGC
CTCGACGAGGAGAATCCATTTTTCCTATTTCCCCTCTCCCTCCACCTTGAGATAAACCGCCACCACCACCTTCTCTTATCGCCGGAGTTGAGCTCCTGCC
GTCGCCGTTCCGGCCTCCTCCCCTAACTCCTTCGCTGGGCGACCACTTCCCCGGGTGCGTGTCGCTCGGGAACACACTTGGCCGCCGCCGTTGAGGCCGT
TCCACGATCGGAGCACCGGCGTCCCTTCTCTCTCTCTCTCTCTGCTGTTCACGGGAAGAAGAGAAGGAACAAGAAGACGAGAGGAAGAAGAAGGAGAAAA
GAAAAAAAAAATAAAGAGCTACTGACAGAGTTTATTTTATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTACCTTGGATTT
ATTCGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTTGAGCATAAATATCCTATATTCTTATATATCTATTCTATGCATTAGTCATTCATGATTTTG
AATGCATAACCTGAACATATAGCAAACCAGATACGCTAGCTTTGCTTAGCCCTGCCTAGTTAGTCTGCATAAAAATATAATGAACTTAGATTTGGATAGT
ACATAGGAATTGGTTGATTTCCGGGTGGCTAGTACTGTCTCAGTCGATATAGTTATTACCAAGTACTTATGTCAAACGAACGAGTACGACCGCAATTATA
GAATGGGGACAGACCTTGCAAAGTAGGTTATCTAGCAAAGGTGGTACCTCTGTACAGTGGTTCTTATTTAAGTCCTCGCGTAGGAGGCAAACTTATGCCG
CGAAGGGCATATGCCGCGAAGGGCAAATATAACATTTACCGAGGCGCAGGTAAATGATTTGTTGAGCTCAAGTGTGTGTGTATTGTAAAAACCTGGTTGA
GATGACGGGGGTCTCTCAACCAGTTCTCTCTCTAAAAACCTCGGGAACGCCAGAACTCCTCTCGCTGCTAATAACGTTACGTTCAGAGCGCATGAGGATG
AGAATTCATGGAACAGGTGCCACTGATGTTAGTAACCGAAAAGCTTTGCCATGACTAAGCTAATGAATATTGGCATGTCATGGATTGCGGGTAAAGCGTA
CATTTACTGCAGTAAAATAAACATGAATCTATTCGAATAGCCGTGCTCACGGAATTGAGTATCGGGACTCATATGGTACTTTGGTTAGAAACCTAATTCA
AGATTTTACTAAATGCTGCTGCATTTAAAACATCAGGCTTTCTATTTCTATATTCTCTGCCTTCTGTAAGTAATCGTAATCCTACTCAAATATTACCTTT
TCATACATTCATTATTGAATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTGCTTCAACCCCCTTTTTCCAGAGTTAAATTGAAGTTCTTGCCGAAG
CCAGGAGTTCAATCATATAAGTTAGTCTTATTTCAACCTAGTTCTCAAATATAGATTAATTAGATGGTTTAAGTCTATAGCAAAACCTTAGAGTTGAGTC
ACACTATAACTTCTGCTGTAATAGTTAGCCACAATCTTGTAAATTCCCCTATTATTTTATGTAATAACATCTCCTTTGGAGCCTTGTTCAAATGTACGCA
ATGAAGATCCAGATTGTTGAAGCTGTATCAATCTACTGATCCAGGGCTTGATATAGTTAAACATGTCGGTTTCCGAATCATTAGTTTTG