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Detailed information on CNT30553255


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697209Oryza glaberrimaOryza sativa42.6130.9890.31320forward
CNT30106410Oryza glaberrimaOryza longistaminata42.4835.3396.24319forward
CNT30101102Oryza glaberrimaOryza rufipogon42.2154.8498.74317forward

Expression of CNT30553255

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PLSLSCHGRPSPTTGRSPPPLILFLFPYAIAFASTRRIHFSYFPSPSTLR*

>peptide 2 (74 aa)
SSLSLLPWPAITHHRPISSSFDPLSISLRHRVCLDEENPFFLFPLSLHLEINRHHHLLLSPELSSCRRRSGLLP*

Sequence

>CNT30553255
CTCCTCTCTCTCTCTCCTGCCATGGCCGGCCATCACCCACCACCGGCCGATCTCCTCCTCCTTTGATCCTCTTTCTATTTCCTTACGCCATCGCGTTTGC
CTCGACGAGGAGAATCCATTTTTCCTATTTCCCCTCTCCCTCCACCTTGAGATAAACCGCCACCACCACCTTCTCTTATCGCCGGAGTTGAGCTCCTGCC
GTCGCCGTTCCGGCCTCCTCCCCTAACTCCTTCGCTGGGCGACCACTTCCCCGGGTGCGTGTCGCTCGGGAACACACTTGGCCGCCGCCGTTGAGGCCGT
TCCACGATCGGAGCACCGGCGTCCCTTCTCTCTCTCTCTCTCTGCTGTTCACGGGAAGAAGAGAAGGAACAAGAAGACGAGAGGAAGAAGAAGGAGAAAA
GAAAAAAAAAATAAAGAGCTACTGACAGAGTTAAATTGAAGTTCTTGCCGAAGCCAGGAGTTCAATCATATAAGTTAGTCTTATTTCAACCTAGTTCTCA
AATATAGATTAATTAGATGGTTTAAGTCTATAGCAAAACCTTAGAGTTGAGTCACACTATAACTTCTGCTGTAATAGTTAGCCACAATCTTGTAAATTCC
CCTATTATTTTATGTAATAACATCTCCTTTGGAGCCTTGTTCAAATGTACGCAATGAAGATCCAGATTGTTGAAGCTGTATCAATCTACTGATCCAGGGC
TTGATATAGTTAAACATGTCGGTTTCCGAATCATTAGTTTTGGGAGCCGAC