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Detailed information on CNT30553208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 4e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30589135Oryza glaberrimaMusa acuminata12.3929.1790.18112forward
CNT3067156Oryza glaberrimaLeersia perrieri7.6325.6597.169forward
CNT30684393Oryza glaberrimaTriticum urartu31.9728.8489.97289forward
CNT30596039Oryza glaberrimaOryza meridionalis10.6236.6410096forward
CNT30147849Oryza glaberrimaBrachypodium distachyon42.0486.1791.84380forward

Expression of CNT30553208

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKRQDVKPGQGGRRNKQTNPCAPSRTLAVRRPTASSINQTITNRRVKKYKEK*

>peptide 2 (63 aa)
MRVPLLGHTYRSRSCGGFFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPGRGGWGR*

>peptide 3 (56 aa)
MPSTPRRSVLKTVWQTWREMSGRMLKRVRLNSCTAAGTSAQRGMRSASRMASRSST*

Sequence

>CNT30553208
GCTAGATATTGACAAATGAAACGACAAGACGTCAAGCCGGGACAAGGAGGAAGAAGAAACAAACAAACGAACCCGTGTGCGCCGTCGCGAACACTCGCCG
TGAGAAGGCCCACGGCGTCGTCCATCAATCAGACCATCACCAATCGGCGAGTGAAAAAATACAAAGAAAAATAATTGTATGCACGAAGCACTCCAGTAAT
GTAATTTTTTTCCAATAGAGTAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGCGCCGAAATATTTTCTAGGCCT
GAGAAGAGGAGGGTAAAATTGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTACTGGGCCACACGTACCGTAGCC
GCAGCTGCGGTGGTTTTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGAT
TAGTACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGTGGGGGAGGTGACCCTCGGTCTGGAGGAACTCGACGGTGGTGC
GGCCGCCGAGGTGGGCCTTGAGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGGACGACGACGCAGGGGGCGCGGACCATGCCGAG
CACGCCGCGGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCGCC
GGCACGTCGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGCAGGTCGTCGACGTAGGCGTCGAGGTTGTCGTAGCGGCGGAAGTCGAAGTGGT
CCGG