Detailed information on CNT30553198


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 3e-49

BLAST vs NONCODE:
NONORUT005134, E-value = 7e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695004Oryza glaberrimaOryza sativa22.577.4786.27102forward
CNT30224680Oryza glaberrimaHordeum vulgare61.2841.0483.75277forward
CNT30448340Oryza glaberrimaSaccharum spontaneum57.347.2686.49259forward
CNT30149Oryza glaberrimaZea mays48.674083.64220forward

Expression of CNT30553198

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SEQQLFPQAKTWFPLKKIEILAQAKNIERV*

>peptide 2 (47 aa)
MTQLSPLKYTRWGKAHPLSKVKAIESFRRSSSDCAFPSGPACMSKSL*

Sequence

>CNT30553198
TTCAGAGCAGCAGCTCTTTCCACAAGCCAAAACATGGTTCCCTTTGAAGAAGATAGAGATCTTGGCACAAGCCAAAAACATTGAGCGTGTTTGAGGACCT
GGAACCAAGATCATCTATGAAGCCAGGAAAGTAGCCAACACAATCCAAAATGCCAAGAGCGGGAGCGTCAATGGTTGTTTTGTTAGAGGGCTTGCATTAG
GCAACCATGGATATGCATCTGGAGGTGGCATGACACAATTGTCTCCATTGAAGTACACACGGTGGGGGAAGGCCCATCCCTTGTCAAAGGTGAAAGCCAT
AGAATCCTTCCGCAGAAGTAGTTCTGACTGCGCATTTCCAAGTGGGCCAGCTTGCATGAGCAAATCATTGTAGAACTTTACTCCCCAGAACATTGCAGTA
TCATCTAAAATAGAAGGAACAAATTCTGTCAGAGAGGTTGAAGGAGGGAGGG