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Detailed information on CNT30553196


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Oryza glaberrimaOryza sativa51.6163.8696.18288forward
CNT30522472Oryza glaberrimaSetaria italica51.2552.0995.45286forward
CNT30317753Oryza glaberrimaCorylus avellana37.4630.0383.73209forward
CNT30549690Oryza glaberrimaIpomoea triloba33.3344.2984.95186forward
CNT30703567Oryza glaberrimaQuercus lobata34.7738.4281.44194forward
CNT30375418Oryza glaberrimaArabidopsis thaliana15.4136.4484.8886forward
CNT30617135Oryza glaberrimaSesamum indicum37.9921.1485.85212forward
CNT3069058Oryza glaberrimaQuercus suber33.6921.4981.38188forward
CNT3042757Oryza glaberrimaPrunus dulcis37.9934.9882.08212forward
CNT30186872Oryza glaberrimaSecale cereale38.7143.2994.44216forward
CNT30286361Oryza glaberrimaTriticum aestivum5051.0196.77279forward
CNT30387206Oryza glaberrimaTriticum turgidum49.6449.6494.95277forward
CNT3086297Oryza glaberrimaVigna radiata40.3219.3580225forward
CNT30437472Oryza glaberrimaAegilops tauschii51.0857.6996.14285forward
CNT30239976Oryza glaberrimaAvena sativa51.4356.9495.82287forward
CNT30664872Oryza glaberrimaTriticum dicoccoides49.6458.9493.14277forward
CNT3082467Oryza glaberrimaBrassica juncea38.5329.9980.93215forward
CNT30261175Oryza glaberrimaBrassica rapa32.6238.5680.77182forward
CNT30471244Oryza glaberrimaSaccharum spontaneum39.4322.9995220forward
CNT30143346Oryza glaberrimaLolium perenne50.1848.0393.93280forward
CNT3015042Oryza glaberrimaZea mays50.3647.4795.73281forward
CNT30720165Oryza glaberrimaTriticum spelta25.6330.4995.8143forward
CNT30348363Oryza glaberrimaEragrostis tef39.0739.1495.41218forward
CNT30620798Oryza glaberrimaCajanus cajan35.337.7482.74197forward
CNT30357929Oryza glaberrimaLactuca sativa25.6331.9281.82143forward
CNT30645368Oryza glaberrimaCannabis sativa25.0942.385.71140forward
CNT30331117Oryza glaberrimaDioscorea rotundata37.4622.0779.9209forward
CNT30148852Oryza glaberrimaBrachypodium distachyon43.7354.9594.26244forward
CNT30101020Oryza glaberrimaOryza rufipogon10095.7193.55558forward
CNT30496126Oryza glaberrimaDigitaria exilis38.7131.7693.52216forward
CNT30117618Oryza glaberrimaOryza nivara44.4455.1199.19248forward

Expression of CNT30553196

Peptides detected in this lncRNA

>peptide 1 (68 aa)
QIQKWISAYNISKRPMDHFLEDSKSDVLIKRENDSFNPTIHSLCTSRNNEVVQFPHNFFLEQRNPKQR*

>peptide 2 (51 aa)
MRFTPPLLASRRIAGLVMPWMLSRSTFLCRFAPPLPRPLPPLPRPDMADDA*

>peptide 3 (33 aa)
SNSKMDQRIQHFKATNGSFFGRQQVGCTNQERK*

Sequence

>CNT30553196
CTCAAATTCAAAAATGGATCAGCGCATACAACATTTCAAAGCGACCAATGGATCATTTTTTGGAAGACAGCAAGTCGGATGTACTAATCAAGAGAGAAAA
TGATTCATTTAATCCAACCATCCATTCACTTTGCACAAGCAGAAACAACGAAGTAGTACAATTTCCGCACAACTTTTTCTTGGAACAACGAAACCCTAAG
CAACGCTAACGGCAGCAGATCTGGATCGAGCACAGGGGGCCGGGAACTCAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGA
CGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGACCGGAGATGCGCTTCACGCC
GCCCCTCCTCGCCAGCCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCGCTTCGCGCCGCCCTTGCCAAGACCC
TTGCCTCCCTTGCCGCGGCCCGACATGGCTGACGATGCGTAAGAGCTCGAGGTGGAAG