Detailed information on CNT30553179


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATL8|TIP22_MAIZE, E-value = 8e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618329Oryza glaberrimaSesamum indicum21.111.8482.88146forward
CNT30662885Oryza glaberrimaTriticum dicoccoides11.7135.5386.4281forward
CNT30136463Oryza glaberrimaLolium perenne21.2420.0590.48147forward
CNT301194Oryza glaberrimaZea mays16.4722.8590.35114forward
CNT30229576Oryza glaberrimaAnanas comosus21.9721.3588.82152forward
CNT3066802Oryza glaberrimaLeersia perrieri20.8160.7693.06144forward

Expression of CNT30553179

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MEWCVCGCLCGAETGRERGRYIYTQRSACTRDTGCG

>peptide 2 (44 aa)
MRVEMNSANAALSAPGWYTSWWLPTAMLRIGILHYSLLLLSHSN*

>peptide 3 (71 aa)
MRETKRLDRSRRRGDHGQAAAAAMSLTAGFMEAPSNAPPTRMFAPTMKPMAMGAMVPRLPFLGSTAVAYTV*

Sequence

>CNT30553179
AATAGCGATCGAATTTGACTAGGAAAAAACGAAGGAACTCAGGCAAATGCATGCACAGTTTTACAGAAGCAAAGCAACGGGTTCCCAAAGGTCCACACTT
ACAGTACGTTCAACGTACAACTGATCCAAGCAAATGAAACAGGTTTGATGATGCACTGATGCGAGAAACTAAACGGTTGGATCGGAGTCGGAGACGAGGC
GATCATGGACAAGCGGCGGCGGCGGCGATGAGCTTAACGGCCGGGTTCATGGAGGCGCCGTCGAACGCGCCGCCGACGAGGATGTTCGCGCCGACGATGA
AGCCGATGGCGATGGGGGCGATGGTGCCGAGGCTGCCCTTCTTGGGGTCAACGGCGGTGGCGTACACGGTGTAGACGAGGCCGAAGGTGCCGGTGGCGAG
CCCGCCGGTGGAGAAGCGGAGGAGGAAGCACGCCACGATGAGGGTGGAGATGAACTCGGCCAACGCCGCCTTGAGTGCACCCGGGTGGTACACCTCCTGG
TGGCTCCCCACGGCGATGTTGCGGATCGGCATCTTGCACTACTCCCTTCTGCTGCTCTCTCACTCAAACTAGAAGAGCTCAGAAATGGAGTGGTGTGTGT
GTGGCTGCCTGTGTGGTGCGGAGACGGGACGGGAGAGAGGCCGGTATATATACACCCAGCGCAGCGCATGCACGAGAGACACCGGGTGTGGC