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Detailed information on CNT30553163


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678417Oryza glaberrimaSetaria viridis125092.12165forward
CNT30522336Oryza glaberrimaSetaria italica10.8456.2393.96149forward
CNT30296550Oryza glaberrimaTriticum aestivum14.447.3789.9198forward
CNT30439764Oryza glaberrimaAegilops tauschii13.3839.489.13184forward
CNT30447830Oryza glaberrimaSaccharum spontaneum10.7625.8792.57148forward
CNT301613Oryza glaberrimaZea mays19.7847.7291.18272forward
CNT30683907Oryza glaberrimaTriticum urartu23.1348.490.25318forward
CNT30369879Oryza glaberrimaOryza glumipatula26.9851.67100371forward
CNT30100699Oryza glaberrimaOryza rufipogon23.22999.69319forward
CNT30575527Oryza glaberrimaOryza barthii16.5135.9799.56227forward
CNT30116295Oryza glaberrimaOryza nivara17.8926.1199.59246forward
CNT30603857Oryza glaberrimaOryza punctata16.8726.6798.28232forward

Expression of CNT30553163

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSLTMICHRLAATAPTTDDSLRRFNRTKMKGNFYSSSRNYCLNKHFQKFILLKF*

>peptide 2 (63 aa)
MRVPLLGHTYRSRSCGGFFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPGRGGWGR*

>peptide 3 (53 aa)
MPSTPRRSVLKTVWQTWREMSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 4 (52 aa)
MKRQDVKPGQGGRRNKQTNPCAPSRTLAVRRPTASSINQTITNRRVKKYKEK*

>peptide 5 (31 aa)
MAIRWAMHVVDNDLPSLSCYRSHNRRFLETF*

Sequence

>CNT30553163
GTAGTGGCCAACTGGGGCAGACAAAGCTACTGGTGACTAATCAGGTTGGTACACGTGGCGACTTGTGATTTCTCTGGGGGGCCGTAGGCTGCGGTTAGAT
GGCAGGGTCAACCTCCTTATCGGCGATATAAATGGCGATAAGATGGGCCATGCATGTCGTTGACAATGATTTGCCATCGCTTAGCTGCTACCGCTCCCAC
AACCGACGATTCCTTGAGACGTTTTAACCGTACAAAAATGAAGGGTAATTTCTACAGCAGCAGTAGAAATTACTGCCTAAATAAACATTTTCAAAAATTT
ATATTATTAAAATTTTGATAAATTGACAACATTATTAAGTTTTGGTAGGATAAATTAAACATGATGTTGCTAAATTCTCTATATAACAAAGTAAATATCG
TTATATATTTGTTAATAACAAATAATGATACGATTTAAATTAATTGAACATATTAGTACTACGAAGAAAAAATTACTGCGGCTAGATATTGACAAATGAA
ACGACAAGACGTCAAGCCGGGACAAGGAGGAAGAAGAAACAAACAAACGAACCCGTGTGCGCCGTCGCGAACACTCGCCGTGAGAAGGCCCACGGCGTCG
TCCATCAATCAGACCATCACCAATCGGCGAGTGAAAAAATACAAAGAAAAATAATTGTATGCACGAAGCACTCCAGTAATGTAATTTTTTTCCAATAGAG
TAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGCGCCGAAATATTTTCTAGGCCTGAGAAGAGGAGGGTAAAATT
GCAGTAAAATCCGACGCGGTAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTACTGGGCCACACGTACCGTAGCCGCAGCTGCGGTGGTTTTTTT
TTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAGTACCGGGCGAGAGCGCG
GCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGTGGGCCTTGAGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGGACGACG
ACGCAGGGGGCGCGGACCATGCCGAGCACGCCGCGGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGG
TGCGGCTGAACTCCTGCACCGCCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGTCGAA
CACCTGCTGTATCTCCTCCAGCTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACATGTCCG