Detailed information on CNT30553142


BLAST search results

BLAST vs Swiss-Prot:
sp|P48489|PP1_ORYSJ, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692142Oryza glaberrimaOryza sativa33.5613.810097forward
CNT3094286Oryza glaberrimaSolanum tuberosum39.4524.6885.96114forward
CNT30509966Oryza glaberrimaSolanum lycopersicum30.459.2286.3688forward
CNT30206348Oryza glaberrimaHelianthus annuus28.7211.1186.7583forward
CNT30338251Oryza glaberrimaEragrostis tef38.0620.7594.55110forward
CNT30595937Oryza glaberrimaOryza meridionalis85.8159.19100248forward
CNT30100650Oryza glaberrimaOryza rufipogon10040.53100289forward

Expression of CNT30553142

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MRPPYHSCPNLERLFLDLTKVGRGKLFISSKCVRSGERPPCMHNILSSISAATGRQLKQSVKTFHRRTLNR

Sequence

>CNT30553142
ACCTGATGTGCCCGGCAAATAAGATCAAGGTCATGTTTTTCCAGGAATTCTGAAACTTTGTCAGCACCAAAAGTGTATGAGACCCCCCTATCATTCATGC
CCCAACCTTGAACGTCTTTTCCTGGATCTGACCAAAGTAGGACGGGGCAAGCTCTTTATCTCATCTAAATGTGTCAGATCAGGAGAGAGGCCACCATGCA
TGCATAATATTTTATCATCAATTAGCGCAGCCACAGGGAGACAGTTAAAACAATCAGTGAAGACCTTCCATAGACGCACATTAAATCGG