Detailed information on CNT30553134


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000218, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101598Oryza glaberrimaOryza rufipogon45.7688.1585.51766reverse complement
CNT30117188Oryza glaberrimaOryza nivara50.78101.0791.53850reverse complement

Expression of CNT30553134

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTKLMNIGMSWIAGKAYIYCSKINMNLFE*

>peptide 2 (49 aa)
LSLSCHGRPSPTTGRSPPPLILFLFPYAIAFASTRRIHFSYFPSPSTLR*

>peptide 3 (43 aa)
MLLHLKHQAFYFYILCLLVKLKFLPKPGVQSYKLVLFQPSSQI*

>peptide 4 (72 aa)
LSLLPWPAITHHRPISSSFDPLSISLRHRVCLDEENPFFLFPLSLHLEINRHHHLLLSPELSSCRRRSGLLP*

>peptide 5 (50 aa)
MTGVSQPVLSLKTSGTPELLSLLITLRSERMRMRIHGTGATDVSNRKALP*

Sequence

>CNT30553134
CTCTCTCTCTCCTGCCATGGCCGGCCATCACCCACCACCGGCCGATCTCCTCCTCCTTTGATCCTCTTTCTATTTCCTTACGCCATCGCGTTTGCCTCGA
CGAGGAGAATCCATTTTTCCTATTTCCCCTCTCCCTCCACCTTGAGATAAACCGCCACCACCACCTTCTCTTATCGCCGGAGTTGAGCTCCTGCCGTCGC
CGTTCCGGCCTCCTCCCCTAACTCCTTCGCTGGGCGACCACTTCCCCGGGTGCGTGTCGCTCGGGAACACACTTGGCCGCCGCCGTTGAGGCCGTTCCAC
GATCGGAGCACCGGCGTCCCTTCTCTCTCTCTCTCTCTGCTGTTCACGGGAAGAAGAGAAGGAACAAGAAGACGAGAGGAAGAAGAAGGAGAAAAGAAAA
AAAAAATAAAGAGCTACTGACAGAGTTTATTTTATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTACCTTGGATTTATTCG
CGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTTGAGCATAAATATCCTATATTCTTATATATCTATTCTATGCATTAGTCATTCATGATTTTGAATGC
ATAACCTGAACATATAGCAAACCAGATACGCTAGCTTTGCTTAGCCCTGCCTAGTTAGTCTGCATAAAAATATAATGAACTTAGATTTGGATAGTACATA
GGAATTGGTTGATTTCCGGGTGGCTAGTACTGTCTCAGTCGATATAGTTATTACCAAGTACTTATGTCAAACGAACGAGTACGACCGCAATTATAGAATG
GGGACAGACCTTGCAAAGTAGGTTATCTAGCAAAGGTGGTACCTCTGTACAGTGGTTCTTATTTAAGTCCTCGCGTAGGAGGCAAACTTATGCCGCGAAG
GGCATATGCCGCGAAGGGCAAATATAACATTTACCGAGGCGCAGGTAAATGATTTGTTGAGCTCAAGTGTGTGTGTATTGTAAAAACCTGGTTGAGATGA
CGGGGGTCTCTCAACCAGTTCTCTCTCTAAAAACCTCGGGAACGCCAGAACTCCTCTCGCTGCTAATAACGTTACGTTCAGAGCGCATGAGGATGAGAAT
TCATGGAACAGGTGCCACTGATGTTAGTAACCGAAAAGCTTTGCCATGACTAAGCTAATGAATATTGGCATGTCATGGATTGCGGGTAAAGCGTACATTT
ACTGCAGTAAAATAAACATGAATCTATTCGAATAGCCGTGCTCACGGAATTGAGTATCGGGACTCATATGGTACTTTGGTTAGAAACCTAATTCAAGATT
TTACTAAATGCTGCTGCATTTAAAACATCAGGCTTTCTATTTCTATATTCTCTGCCTTCTAGTTAAATTGAAGTTCTTGCCGAAGCCAGGAGTTCAATCA
TATAAGTTAGTCTTATTTCAACCTAGTTCTCAAATATAGATTAATTAGATGGTTTAAGTCTATAGCAAAACCTTAGAGTTGAGTCACACTATAACTTCTG
CTGTAATAGTTAGCCACAATCTTGTAAATTCCCCTATTATTTTATGTAATAACATCTCCTTTGGAGCCTTGTTCAAATGTACGCAATGAAGATCCAGATT
GTTGAAGCTGTATCAATCTACTGATCCAGGGCTTGATATAGTTAAACATGTCGGTTTCCGAATCATTAGTTTTG