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Detailed information on CNT30553132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30136184Oryza glaberrimaLolium perenne12.7222.4786.24109forward
CNT30340753Oryza glaberrimaEragrostis tef12.1420.9388.46104forward
CNT30369972Oryza glaberrimaOryza glumipatula70.9555.1299.51608forward
CNT30575936Oryza glaberrimaOryza barthii74.2192.0499.53636forward
CNT30116167Oryza glaberrimaOryza nivara51.2362.899.54439forward

Expression of CNT30553132

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MPCQEKSGRAFDSELSLVSGSYLMDAMAAATSSSSTRLMTGVALTAGAAAAVARPRLRVSGVVAEGKLSLALSPRMARAASS*

>peptide 2 (67 aa)
MLAWQNHSSMYMTWYKIESQGRRRRRLEPRRTSWPRRRRGSSRRRSSRAPCPGWRRRRRRWSARRRR*

Sequence

>CNT30553132
TGAACATCAGACAACATAAACATGGTGATTAACTGAAACTCAGATTTTTGCATCAAAGGCACAGCCAAAAAGATCTTTTACGAGAACGAGAAGCCTCACA
TAATTTTTCATTACCGAAAGGAACCAGGACGAACACATGCTTGCTTGGCAAAACCACTCTTCTATGTACATGACATGGTACAAGATCGAGTCACAGGGTC
GCCGGAGACGACGGCTAGAGCCTAGAAGGACAAGCTGGCCTCGACGTCGACGAGGCAGCAGCCGTCGTCGAAGCTCCAGAGCCCCATGCCCTGGTTGGCG
GCGGCGGCGGCGGCGGTGGTCTGCACGGCGTCGGCGCTGAACAGGCTGTCCAGGGACTCGTAGGCGCCGCCGTTGAAGTAGTTGTACTGGTCGGCGAACA
GCAGCGCGTCGAACAGCGCGTCGGTGTCGTCGCCGGAGCCGGAGTCGGTGGTGGTGGTGGTGTCCTCCGGCTCGGTCCTCGGACGCTTCTTGGCGAGGCC
GACATGCCCTGCCAGGAGAAGTCCGGGAGGGCGTTCGACTCGGAGCTCTCGCTGGTCTCGGGCTCGTACTTGATGGACGCCATGGCGGCGGCGACCTCCT
CCTCCTCGACGAGGTTGATGACCGGGGTCGCCTTGACGGCCGGGGCGGCGGCGGCGGTGGCGCGGCCGCGCTTGCGGGTGTCAGGGGTGGTAGCGGAAGG
GAAGTTGAGCTTGGCCCTGTCCCCGCGGATGGCGCGCGCGGCGTCGTCGTAGGCGAGCGCGGCGGCCTCGGCGTTGGTGAAGGTGCCGAGCCAGACGCGG
ATGCCCTTGACGGGGTCGCGGATCTCCGCCGCCCACTTCCCCCACGGCCGGCGCCGC