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Detailed information on CNT30553128

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692252	Oryza glaberrima	Oryza sativa	79.31	91.02	99.5	598	forward
CNT30107330	Oryza glaberrima	Oryza longistaminata	30.5	85.19	95.22	230	forward
CNT30100741	Oryza glaberrima	Oryza rufipogon	54.24	87.02	99.27	409	forward
CNT30575620	Oryza glaberrima	Oryza barthii	85.41	90.32	100	644	forward
CNT30116257	Oryza glaberrima	Oryza nivara	49.2	64.3	99.46	371	forward

Expression of CNT30553128

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MTPRRRRPAAAIWRFRGGLERVDHRCALAAVDRDDGGSLLSASPGPLQLHNILDKH*

Sequence

>CNT30553128
CGATGACCCCGCGGCGGCGCCGGCCGGCGGCGGCGATATGGCGGTTTCGTGGGGGGCTTGAGCGTGTCGACCACCGGTGTGCCCTCGCCGCCGTGGACCG
AGACGACGGCGGCTCCCTCCTCTCTGCTTCCCCAGGTCCACTTCAGCTGCACAATATACTGGATAAGCACTGAACGAAGACTGTATTAACTTATTAGCAG
TTTGAAACGTATTTGATGCCCGTGCCAAGCAACTAAACAAGAGGCCTTCGAATTGTCATTGACGAAGACCTGAGCTACGGGCCTAAGGTGTGTCCATGTT
TTACTCCAGTTTGGATCATGTGACCGGCATCTTGGATCTTGCCAATTGCAGTCCCAGAAATTCAGGTAGGAGCAAATGAAATGAGGGGCATATGCAAATT
GGGACTATCTTTAGGACACGTTTGCAGGCAGGATTATTTTTGCCGTTTATATGGGAAATCGAGCTGATTTGAATTAGATTCCTGTATTTGGTTTCATGTA
CTTGAGTTGAATGCGCTTAAATGCGTCCGATTTCCATAGGCTTCAGTAGAGCGTGTTTAATGTTCTTTCTACCTCCAATTTTAGCAACTCTTTGATTCTG
TGCGCATGCAGCATATTTCTTCCAAGGAAGTACACCTATCATGAAAGATTCGTTGTAAAAATATGAACTAAAATCGAACCTTCCAATCATTAATAGGACT
TCTCCAGATTTGACCACTAACATGGCAACACATAATAAGATTAAGTAGAACGGC