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Detailed information on CNT30553114


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003945, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596016Oryza glaberrimaOryza meridionalis74.7761.399.76415forward
CNT30148063Oryza glaberrimaBrachypodium distachyon30.8132.786.55171forward
CNT30575816Oryza glaberrimaOryza barthii60.3684.6100335forward

Expression of CNT30553114

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSSERITTRTPKISFTRCTQHPGLLLTDEFIPICHTDTENRGSVSLCCLLSVCVLCCTKQTSVVPSV*

>peptide 2 (29 aa)
MVSKLTVEVGELETSEELQRRWCSYRFHF*

>peptide 3 (30 aa)
MLSAFCMCPLLYQTNICRSLRLMLKKYSAI*

Sequence

>CNT30553114
AGCTGTATAAAGGTTACACAAATCCTTTAGTATGATGATAAAGTCACTCCTATAAAACGGTTTATAAAGGTTCCATTTCTACAAAAAGAACTTCACACAT
GAGCTCTGAACGAATAACAACAAGGACCCCAAAAATTAGTTTCACAAGGTGCACACAACATCCCGGTCTATTGTTGACAGATGAATTTATACCGATCTGT
CATACTGATACAGAAAATAGAGGCTCTGTAAGCTTATGTTGTCTGCTTTCTGTATGTGTCCTTTGCTGTACCAAACAAACATCTGTCGTTCCCTCCGTTT
GATGCTCAAGAAATATTCAGCGATCTGACTCTTCATGGTTTCCAAGCTGACGGTGGAGGTGGGGGAGTTGGAAACATCGGAGGAACTGCAGAGAAGATGG
TGTTCTTATCGATTCCACTTTTGACGTGAACGTTAGTTAGGGAAATCAAGGCTGCCACCAGGCCAGCATTTGCTGCAAGAGTAGGCTCGGAAAGCCGCAT
TGACAACATACTGAAGTGGCTGAGGCCTTCCGTGGTTGAGCTGTATCATTCCTCC