CANTATAdb - search

Detailed information on CNT30553103

BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691960	Oryza glaberrima	Oryza sativa	51.2	100.89	97.07	341	forward
CNT30369755	Oryza glaberrima	Oryza glumipatula	76.13	83.11	99.61	507	forward
CNT30105279	Oryza glaberrima	Oryza longistaminata	71.92	59.5	91.44	479	forward
CNT30101051	Oryza glaberrima	Oryza rufipogon	88.59	89.94	97.8	590	forward
CNT30575905	Oryza glaberrima	Oryza barthii	80.48	86.04	100	536	forward

Expression of CNT30553103

Peptides detected in this lncRNA

>peptide 1 (57 aa)
ELASTVRVELTGMQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (76 aa)
MGRLRLMPRMLARRAVQRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPP

Sequence

>CNT30553103
AGAGCTAGCTAGTACAGTACGTGTAGAATTAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAA
TTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCA
TTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGG
CCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGG
AGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCTGCAACACGG
CTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCTCCC
CCGCCGCCGCCGCTTCCTCCTCCTCCTCCGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCG