Detailed information on CNT30553102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003925, E-value = 4e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691875Oryza glaberrimaOryza sativa99.5457.58100437forward
CNT3067165Oryza glaberrimaLeersia perrieri84.74101.9284.95372forward
CNT30595975Oryza glaberrimaOryza meridionalis88.1598.9898.19387forward
CNT30100753Oryza glaberrimaOryza rufipogon96.3692.76100423forward
CNT30575871Oryza glaberrimaOryza barthii91.1284.93100400forward

Expression of CNT30553102

Peptides detected in this lncRNA

>peptide 1 (48 aa)
SQSQILTVPKKCNNCILTEGMGWHIYTVPYNNHLQASLARSKHKNEWA*

>peptide 2 (36 aa)
MKTGIHYDTLSDVRLQVSEALTRCICALHDLISFLV*

Sequence

>CNT30553102
AATCACAATCACAAATTCTGACAGTACCTAAAAAATGCAACAATTGTATATTGACAGAAGGAATGGGCTGGCATATTTACACTGTTCCATACAATAACCA
TTTGCAGGCTAGCTTAGCCAGGAGCAAGCACAAGAATGAATGGGCATAGCTGCGATTTCTCCCTAGAGAAACTAAATTGCAGGTTAGCCAGGAGCTAACA
CATGCATATGCCATGAAAACTGGAATACACTACGATACTTTGTCGGACGTGCGCTTGCAGGTTAGCGAGGCGCTAACGCGGTGCATATGTGCACTTCACG
ACCTTATTTCTTTTCTCGTTTAAATTTGGGGGAGGTGAGGTCAATTAGGTGTTGACCTGGATTTCCCCCAGAGAGTATGGACAGTCTGATGGGTTCTTCA
CTTCTCGCAGAAGTCGAGGAACCCCATGTACTCATGGTT